miRNA display CGI


Results 61 - 80 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 137303 0.66 0.425227
Target:  5'- cGCuGCUGGCgCGCuGCGCGaacGCCUaCUUCCa -3'
miRNA:   3'- -CG-CGGCCG-GCG-CGCGC---CGGGgGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 81188 0.66 0.433191
Target:  5'- cGCGCCGGUacuCGgacCGCagGGCCCggaCCUCCu -3'
miRNA:   3'- -CGCGGCCGgc-GC---GCG--CCGGGg--GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 113147 0.66 0.425227
Target:  5'- cGCGCCGaggacGCCGCGCcaccacucgccGCGaGCCgCCgCCaCCg -3'
miRNA:   3'- -CGCGGC-----CGGCGCG-----------CGC-CGG-GG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 78939 0.66 0.433191
Target:  5'- gGCGUCGGCUccgGCGuCGuCGGCgUCCCCg-- -3'
miRNA:   3'- -CGCGGCCGG---CGC-GC-GCCG-GGGGGagg -5'
10924 3' -69.2 NC_002794.1 + 56173 0.66 0.433191
Target:  5'- cCGCCGGCCGUGC-CGGaCagguagCCCCa-- -3'
miRNA:   3'- cGCGGCCGGCGCGcGCC-Gg-----GGGGagg -5'
10924 3' -69.2 NC_002794.1 + 60374 0.66 0.433191
Target:  5'- cCGCCGucgaCGCGCGCGGgCCCgaugCCCgcacaCCg -3'
miRNA:   3'- cGCGGCcg--GCGCGCGCC-GGG----GGGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 95075 0.66 0.433191
Target:  5'- cGCGCCuGCgGUuCGCGGCCgCUUCUgCg -3'
miRNA:   3'- -CGCGGcCGgCGcGCGCCGG-GGGGAgG- -5'
10924 3' -69.2 NC_002794.1 + 129814 0.66 0.433191
Target:  5'- cGgGCCGGCaGCG-GCGGCCUgUUCUCg -3'
miRNA:   3'- -CgCGGCCGgCGCgCGCCGGG-GGGAGg -5'
10924 3' -69.2 NC_002794.1 + 194836 0.66 0.433191
Target:  5'- gGCauCCGGCC-CGCaCcacGCCCCCUUCCa -3'
miRNA:   3'- -CGc-GGCCGGcGCGcGc--CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 49869 0.66 0.433191
Target:  5'- aGCGCCcagaacGGCCGC-CGgGGCCggagacgccgUCCCagUCCg -3'
miRNA:   3'- -CGCGG------CCGGCGcGCgCCGG----------GGGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 59845 0.67 0.386758
Target:  5'- cCGCUGGUCaCuCGCGuGCCCCgUUCCg -3'
miRNA:   3'- cGCGGCCGGcGcGCGC-CGGGGgGAGG- -5'
10924 3' -69.2 NC_002794.1 + 74376 0.67 0.386758
Target:  5'- cCGCCGGuUCG-GaCGCGGCCUCCg-CCg -3'
miRNA:   3'- cGCGGCC-GGCgC-GCGCCGGGGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 49545 0.67 0.386758
Target:  5'- cGgGCUcGCCGaCGCGCGGCggauucgaCCCCgUCg -3'
miRNA:   3'- -CgCGGcCGGC-GCGCGCCG--------GGGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 183680 0.67 0.386758
Target:  5'- cCGCCGacGCCGC-CGCGGCCgggcgCCgCUCg -3'
miRNA:   3'- cGCGGC--CGGCGcGCGCCGG-----GGgGAGg -5'
10924 3' -69.2 NC_002794.1 + 94411 0.67 0.38975
Target:  5'- aCGCCGG-CGCGCccgcccgaaacgccgGCGcGCCCgCCCgaaacgCCg -3'
miRNA:   3'- cGCGGCCgGCGCG---------------CGC-CGGG-GGGa-----GG- -5'
10924 3' -69.2 NC_002794.1 + 178424 0.67 0.394267
Target:  5'- cGCGCC-GCCG-GCGCucgGGCCCgCgaCCg -3'
miRNA:   3'- -CGCGGcCGGCgCGCG---CCGGGgGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 117912 0.67 0.394267
Target:  5'- gGCGCCGcgaucgccGCCGuCGC-CGaGCCgaCUCCUCCg -3'
miRNA:   3'- -CGCGGC--------CGGC-GCGcGC-CGG--GGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 146389 0.67 0.394267
Target:  5'- cGUGaCCGGCCGC-CGCGGgUCUgucgaCCUCg -3'
miRNA:   3'- -CGC-GGCCGGCGcGCGCCgGGG-----GGAGg -5'
10924 3' -69.2 NC_002794.1 + 61180 0.67 0.394267
Target:  5'- aCG-CGGCCGCGCuuGGCUcgaCCgCCUCUg -3'
miRNA:   3'- cGCgGCCGGCGCGcgCCGG---GG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 171917 0.67 0.386758
Target:  5'- aGC-CCGGCCGCgGCGCacuuGGCUCCgagCCa -3'
miRNA:   3'- -CGcGGCCGGCG-CGCG----CCGGGGggaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.