miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 1204 0.86 0.018149
Target:  5'- uGCGUCGGCUGCGcCG-GGUCCCCCUCCg -3'
miRNA:   3'- -CGCGGCCGGCGC-GCgCCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 135209 0.82 0.032733
Target:  5'- gGCGCCGGCCacccgGCGCGCGccGCCgCCgCCUCCg -3'
miRNA:   3'- -CGCGGCCGG-----CGCGCGC--CGG-GG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 111682 0.81 0.041785
Target:  5'- aGCGCuCGGCCcgGCGCuCGGCCCgCCUCCc -3'
miRNA:   3'- -CGCG-GCCGG--CGCGcGCCGGGgGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 10301 0.8 0.049536
Target:  5'- cGCGCCccgcccugccgcGGCaggGCGCGCGGCuCUCCCUCCc -3'
miRNA:   3'- -CGCGG------------CCGg--CGCGCGCCG-GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 75403 0.79 0.057279
Target:  5'- cGCGUCGGCCuggcucgauuuCGCGCGGCCCCgCCUgCa -3'
miRNA:   3'- -CGCGGCCGGc----------GCGCGCCGGGG-GGAgG- -5'
10924 3' -69.2 NC_002794.1 + 176333 0.79 0.060113
Target:  5'- aGCGCCGGCgCG-GCGCGGCCCgCCggugUCg -3'
miRNA:   3'- -CGCGGCCG-GCgCGCGCCGGGgGGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 163555 0.79 0.060113
Target:  5'- cGCGgCGGCCGCGCcggccGCGGCCggagacaagCCCUCCg -3'
miRNA:   3'- -CGCgGCCGGCGCG-----CGCCGGg--------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 8015 0.79 0.060549
Target:  5'- cGCGCCGagggcucugcccaGCCGCGCGCGGCUCgccgcuagcuauauaCCCUCUc -3'
miRNA:   3'- -CGCGGC-------------CGGCGCGCGCCGGG---------------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 176534 0.78 0.064618
Target:  5'- cGCGCUGGCgaccCGCGCGcCGGUcaCCCCCUCg -3'
miRNA:   3'- -CGCGGCCG----GCGCGC-GCCG--GGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 71443 0.78 0.067801
Target:  5'- gGCGCCGuCCGC-CGCGGUCUCUCUCCc -3'
miRNA:   3'- -CGCGGCcGGCGcGCGCCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 126919 0.78 0.07286
Target:  5'- cCGCgGGCCGCgGCGcCGGCgCCUCUCCc -3'
miRNA:   3'- cGCGgCCGGCG-CGC-GCCGgGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 120483 0.77 0.074625
Target:  5'- cGCgGCCGGCgGCG-GCGGCCUcuccccguCCCUCCu -3'
miRNA:   3'- -CG-CGGCCGgCGCgCGCCGGG--------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 188930 0.77 0.082106
Target:  5'- -aGCCGcaGCCGcCGCGCGGCaCCCUCUCg -3'
miRNA:   3'- cgCGGC--CGGC-GCGCGCCG-GGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 122990 0.77 0.084085
Target:  5'- uCGCCucgacuccucGGCCGgGuCGCGGCCCUCCUCg -3'
miRNA:   3'- cGCGG----------CCGGCgC-GCGCCGGGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 126800 0.76 0.090299
Target:  5'- uCGCCacgGGCCGcCGC-CGGCCgCCCUCCu -3'
miRNA:   3'- cGCGG---CCGGC-GCGcGCCGGgGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 5502 0.76 0.099264
Target:  5'- uCGUCGGCCGCGCgGCGcagcggguGCUCCCgCUCCu -3'
miRNA:   3'- cGCGGCCGGCGCG-CGC--------CGGGGG-GAGG- -5'
10924 3' -69.2 NC_002794.1 + 146243 0.75 0.104056
Target:  5'- gGCGCCGGCgGCGCcuCGcCCgCCCCUCUa -3'
miRNA:   3'- -CGCGGCCGgCGCGc-GCcGG-GGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 47313 0.75 0.106533
Target:  5'- uCGUCGGCUGCGCGCGGCUCUUucugCUCg -3'
miRNA:   3'- cGCGGCCGGCGCGCGCCGGGGG----GAGg -5'
10924 3' -69.2 NC_002794.1 + 183628 0.75 0.106533
Target:  5'- gGCGCCGGCgGCGCcguccGCGGCgCCgaUCCg -3'
miRNA:   3'- -CGCGGCCGgCGCG-----CGCCGgGGggAGG- -5'
10924 3' -69.2 NC_002794.1 + 154558 0.75 0.109065
Target:  5'- aCGCgGGCCGCGUGgGGUCUCCgagguCUCCg -3'
miRNA:   3'- cGCGgCCGGCGCGCgCCGGGGG-----GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.