miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 172236 0.75 0.111654
Target:  5'- gGCGcCCGGa--CGCGCGGCccucgaCCCCCUCCg -3'
miRNA:   3'- -CGC-GGCCggcGCGCGCCG------GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 182905 0.75 0.114033
Target:  5'- gGCGuuGGCCGUGUcggugacGUGGCCUUCUUCCu -3'
miRNA:   3'- -CGCggCCGGCGCG-------CGCCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 147899 0.75 0.1143
Target:  5'- gGCGCCGGCUGgGCGaccgcCGcGCgCUCCUCCg -3'
miRNA:   3'- -CGCGGCCGGCgCGC-----GC-CGgGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 194566 0.75 0.1143
Target:  5'- -gGaCCGGCCGCugGCcaaaaugaggaaGCGuGCCCCCCUCCc -3'
miRNA:   3'- cgC-GGCCGGCG--CG------------CGC-CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 160868 0.75 0.116187
Target:  5'- uGCGCCGGCUGCGgGCccGGCacuauguacagcaaCCgCCUCCu -3'
miRNA:   3'- -CGCGGCCGGCGCgCG--CCG--------------GGgGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 12260 0.75 0.117004
Target:  5'- gGCGgaggggGGCCGCGCGCGGCcggcgCCCCCgcgCCc -3'
miRNA:   3'- -CGCgg----CCGGCGCGCGCCG-----GGGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 105395 0.75 0.119768
Target:  5'- gGCGa-GGCCGCGCGCGGCggggCCgCCgUCCc -3'
miRNA:   3'- -CGCggCCGGCGCGCGCCG----GG-GGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 4346 0.75 0.119768
Target:  5'- gGUGCCaGcGCCGgGCGuCGGCCCgCgCCUCCc -3'
miRNA:   3'- -CGCGG-C-CGGCgCGC-GCCGGG-G-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 10107 0.75 0.119768
Target:  5'- cGCGuCCaGCCGCcgGCGCGGCCgCCCgUCa -3'
miRNA:   3'- -CGC-GGcCGGCG--CGCGCCGG-GGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 1078 0.74 0.122593
Target:  5'- -gGCCGGCaCGCGCgcaGCGGCUCCCagugCCc -3'
miRNA:   3'- cgCGGCCG-GCGCG---CGCCGGGGGga--GG- -5'
10924 3' -69.2 NC_002794.1 + 87645 0.74 0.125479
Target:  5'- cGCGCCGGCCucGCGCccuGCGGCaauCCgCUCUa -3'
miRNA:   3'- -CGCGGCCGG--CGCG---CGCCGg--GGgGAGG- -5'
10924 3' -69.2 NC_002794.1 + 182047 0.74 0.128429
Target:  5'- gGC-CCGGCCgGCgGCGaCGGCCuCCuCCUCCu -3'
miRNA:   3'- -CGcGGCCGG-CG-CGC-GCCGG-GG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 180592 0.74 0.128429
Target:  5'- cCGUCGGCgaGcCGCGCGG-CUCCCUCCg -3'
miRNA:   3'- cGCGGCCGg-C-GCGCGCCgGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 154496 0.74 0.131442
Target:  5'- cCGUCGGCCuucGCGCucGCGGCgCCUCCUUCg -3'
miRNA:   3'- cGCGGCCGG---CGCG--CGCCG-GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 9358 0.74 0.137347
Target:  5'- cGCGCCuccccGCCGUggaagcaGCGCGGCaCCUUCUCCa -3'
miRNA:   3'- -CGCGGc----CGGCG-------CGCGCCG-GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 134895 0.74 0.137665
Target:  5'- aGCGCCGGgccuaCGCGCGCcuccGGaCCCUCCUgCg -3'
miRNA:   3'- -CGCGGCCg----GCGCGCG----CC-GGGGGGAgG- -5'
10924 3' -69.2 NC_002794.1 + 10906 0.74 0.137665
Target:  5'- uGCGCCGGCC-CGCGCaGCCgCUCgUCg -3'
miRNA:   3'- -CGCGGCCGGcGCGCGcCGG-GGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 184216 0.73 0.144157
Target:  5'- aGCGacgggCGGCCGaCGaCGCGGCCCgCCggCCa -3'
miRNA:   3'- -CGCg----GCCGGC-GC-GCGCCGGGgGGa-GG- -5'
10924 3' -69.2 NC_002794.1 + 11350 0.73 0.147169
Target:  5'- gGCGCgGGCCccGCGCGCGGCgcgggcgacgccgCCCaCCgCCg -3'
miRNA:   3'- -CGCGgCCGG--CGCGCGCCG-------------GGG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 9210 0.73 0.147508
Target:  5'- cGgGUCGGCCGCGCGCaccccguacacGGCgCCCgCCacgUCCa -3'
miRNA:   3'- -CgCGGCCGGCGCGCG-----------CCG-GGG-GG---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.