miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 112955 0.73 0.150928
Target:  5'- uCGCCGuCCGCcuCGCGGCCCCgCCgCCg -3'
miRNA:   3'- cGCGGCcGGCGc-GCGCCGGGG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 174142 0.73 0.152317
Target:  5'- gGCGCUGcGUCGCGauCGCGaggccgaagcggugcGCCUCCCUCCa -3'
miRNA:   3'- -CGCGGC-CGGCGC--GCGC---------------CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 173980 0.73 0.154069
Target:  5'- -gGCCGGCCGCGgggugucCGCGGCCUgCgUCg -3'
miRNA:   3'- cgCGGCCGGCGC-------GCGCCGGGgGgAGg -5'
10924 3' -69.2 NC_002794.1 + 119317 0.73 0.16126
Target:  5'- gGCGCCgacgcGGUCGCGCGCcggguacucacccGGCCCgCCgCCg -3'
miRNA:   3'- -CGCGG-----CCGGCGCGCG-------------CCGGGgGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 157356 0.73 0.161628
Target:  5'- gGCGCCGGUCGC-CGCcGCCUCCgcgaUCCc -3'
miRNA:   3'- -CGCGGCCGGCGcGCGcCGGGGGg---AGG- -5'
10924 3' -69.2 NC_002794.1 + 4488 0.73 0.161628
Target:  5'- cGgGCCGGacccuCCGCGCccGCGGCCgCCCaCCa -3'
miRNA:   3'- -CgCGGCC-----GGCGCG--CGCCGGgGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 96264 0.72 0.16422
Target:  5'- cGCGgCGGCgGCGCGCgcucgcgccgccucGGCCCCgUUUCu -3'
miRNA:   3'- -CGCgGCCGgCGCGCG--------------CCGGGGgGAGG- -5'
10924 3' -69.2 NC_002794.1 + 93349 0.72 0.165343
Target:  5'- aGCgGCUGGCgCGCGCGCGGgacgaCCUCUUCUc -3'
miRNA:   3'- -CG-CGGCCG-GCGCGCGCCg----GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 65197 0.72 0.165343
Target:  5'- cCGCCGGCCGCGggcuccgcCGCGGCCUCgUgggaggcgCCg -3'
miRNA:   3'- cGCGGCCGGCGC--------GCGCCGGGGgGa-------GG- -5'
10924 3' -69.2 NC_002794.1 + 164336 0.72 0.165343
Target:  5'- aGCuCCGGuuGCGCgGCGaGCCCCgacgUCUCCg -3'
miRNA:   3'- -CGcGGCCggCGCG-CGC-CGGGG----GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 155287 0.72 0.165343
Target:  5'- cGCGCCGuCCugGC-CGCGGgCCCUCUCCu -3'
miRNA:   3'- -CGCGGCcGG--CGcGCGCCgGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 12168 0.72 0.168752
Target:  5'- aGCGCCcGCCGCGCGCGGCggcacagCCacaCCgucagCCc -3'
miRNA:   3'- -CGCGGcCGGCGCGCGCCG-------GGg--GGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 81983 0.72 0.169135
Target:  5'- cGCGCuCGGCCGCggcgcgcgucgGCGCGGUCUgcaggaaggCCUCCa -3'
miRNA:   3'- -CGCG-GCCGGCG-----------CGCGCCGGGg--------GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 157946 0.72 0.169135
Target:  5'- uCGCCGGCCucaacgucaaccGC-CGCGGCCgCCCgugCCu -3'
miRNA:   3'- cGCGGCCGG------------CGcGCGCCGGgGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 9558 0.72 0.173005
Target:  5'- gGCgGCCGGUCGC-CGCGGCgCgcucgUCCUCCa -3'
miRNA:   3'- -CG-CGGCCGGCGcGCGCCGgG-----GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 103421 0.72 0.173005
Target:  5'- aCGCUGGCCGUGCGgGGCCgCgcggaCUUCa -3'
miRNA:   3'- cGCGGCCGGCGCGCgCCGGgGg----GAGG- -5'
10924 3' -69.2 NC_002794.1 + 194969 0.72 0.176954
Target:  5'- cGCGCgGGCCGgGUGCcaacgccGCUCCCCgcgCCu -3'
miRNA:   3'- -CGCGgCCGGCgCGCGc------CGGGGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 76351 0.72 0.176954
Target:  5'- uCGUCGGCgGCGCGgagcCGGCCgcggaCCCCUCg -3'
miRNA:   3'- cGCGGCCGgCGCGC----GCCGG-----GGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 130595 0.72 0.176954
Target:  5'- uCGCCGaGCgGCgGCGCcuccucGCCCCCCUCg -3'
miRNA:   3'- cGCGGC-CGgCG-CGCGc-----CGGGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 96319 0.72 0.180576
Target:  5'- uGUGCgGGCCGCggaaaccGCGCGcGCCCUCCg-- -3'
miRNA:   3'- -CGCGgCCGGCG-------CGCGC-CGGGGGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.