miRNA display CGI


Results 61 - 80 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 79725 0.72 0.180982
Target:  5'- gGCGgCGGCgGCG-GCGGCCagggccugcaCCgCCUCCg -3'
miRNA:   3'- -CGCgGCCGgCGCgCGCCGG----------GG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 85598 0.72 0.180982
Target:  5'- cGCGCgGcGUCGCGacgGCGGCCgCCgUCCu -3'
miRNA:   3'- -CGCGgC-CGGCGCg--CGCCGGgGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 130498 0.72 0.180982
Target:  5'- gGCGCCGGCgcccUGaCGCcacaCGGCgCCCCCUCa -3'
miRNA:   3'- -CGCGGCCG----GC-GCGc---GCCG-GGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 173902 0.72 0.185092
Target:  5'- cCGUCGGCCGCuccCGCGGCgCCgucgUCUCCg -3'
miRNA:   3'- cGCGGCCGGCGc--GCGCCGgGG----GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 91418 0.72 0.185092
Target:  5'- aCGCC-GCCGCGgGCGGCCCgagCCCg-- -3'
miRNA:   3'- cGCGGcCGGCGCgCGCCGGG---GGGagg -5'
10924 3' -69.2 NC_002794.1 + 117783 0.72 0.189283
Target:  5'- aCGCCGGCCGC-CGC--CCUCgCCUCCg -3'
miRNA:   3'- cGCGGCCGGCGcGCGccGGGG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 6682 0.72 0.189283
Target:  5'- aCGUagaUGGCCGCGUGC-GCCCCCCa-- -3'
miRNA:   3'- cGCG---GCCGGCGCGCGcCGGGGGGagg -5'
10924 3' -69.2 NC_002794.1 + 142119 0.72 0.189283
Target:  5'- uCGCCGGCCGC-CGCuGCCgCCgCCgcugCCg -3'
miRNA:   3'- cGCGGCCGGCGcGCGcCGG-GG-GGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 105636 0.72 0.189283
Target:  5'- cGCGCCGGagccCCGCcUGUGGUCCCCgcgcgcgugguCUCCg -3'
miRNA:   3'- -CGCGGCC----GGCGcGCGCCGGGGG-----------GAGG- -5'
10924 3' -69.2 NC_002794.1 + 4189 0.72 0.189283
Target:  5'- gGCGCCGGCagcgGCG-GCGGCgUgCCCUCg -3'
miRNA:   3'- -CGCGGCCGg---CGCgCGCCG-GgGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 94283 0.71 0.192267
Target:  5'- aGUGCCGGCCGC-CGCGGCcgggggggcgggugCCggCCCgCCg -3'
miRNA:   3'- -CGCGGCCGGCGcGCGCCG--------------GG--GGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 81723 0.71 0.193127
Target:  5'- cCGCCGGCCaggGCGCGCaGGCgCCgcgucagCCgCUCCa -3'
miRNA:   3'- cGCGGCCGG---CGCGCG-CCG-GG-------GG-GAGG- -5'
10924 3' -69.2 NC_002794.1 + 115411 0.71 0.193558
Target:  5'- cCGCCGGCC-CGUcgGCGGCCCgcugcccgUCUUCCg -3'
miRNA:   3'- cGCGGCCGGcGCG--CGCCGGG--------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 115344 0.71 0.193558
Target:  5'- uGCGCCGcGgCGCGCGacgccuggcacCGGCgCCUCUUCCc -3'
miRNA:   3'- -CGCGGC-CgGCGCGC-----------GCCG-GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 176607 0.71 0.193558
Target:  5'- uGUGCCGaCCgGC-CGCGGCCCCCguggcgcguCUCCu -3'
miRNA:   3'- -CGCGGCcGG-CGcGCGCCGGGGG---------GAGG- -5'
10924 3' -69.2 NC_002794.1 + 113383 0.71 0.193558
Target:  5'- cCGUCGGCCuccGCGaCGCGGCCCgCCg-- -3'
miRNA:   3'- cGCGGCCGG---CGC-GCGCCGGGgGGagg -5'
10924 3' -69.2 NC_002794.1 + 117176 0.71 0.201913
Target:  5'- cCGCCGGCCGCauGUGCGGCCgacacggCgCCgCCa -3'
miRNA:   3'- cGCGGCCGGCG--CGCGCCGG-------GgGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 83590 0.71 0.202362
Target:  5'- gGCGUcucguccuCGGCCuccguguCGgGCGGCCCCCCgggUCCg -3'
miRNA:   3'- -CGCG--------GCCGGc------GCgCGCCGGGGGG---AGG- -5'
10924 3' -69.2 NC_002794.1 + 124083 0.71 0.202362
Target:  5'- cGCGCC-GUCGCGCgGCGagucGCCCCCCg-- -3'
miRNA:   3'- -CGCGGcCGGCGCG-CGC----CGGGGGGagg -5'
10924 3' -69.2 NC_002794.1 + 43914 0.71 0.202362
Target:  5'- cCGCCGcCCGCGaCGaCGGCCCCgggugCUCCu -3'
miRNA:   3'- cGCGGCcGGCGC-GC-GCCGGGGg----GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.