miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 49869 0.66 0.433191
Target:  5'- aGCGCCcagaacGGCCGC-CGgGGCCggagacgccgUCCCagUCCg -3'
miRNA:   3'- -CGCGG------CCGGCGcGCgCCGG----------GGGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 194836 0.66 0.433191
Target:  5'- gGCauCCGGCC-CGCaCcacGCCCCCUUCCa -3'
miRNA:   3'- -CGc-GGCCGGcGCGcGc--CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 129814 0.66 0.433191
Target:  5'- cGgGCCGGCaGCG-GCGGCCUgUUCUCg -3'
miRNA:   3'- -CgCGGCCGgCGCgCGCCGGG-GGGAGg -5'
10924 3' -69.2 NC_002794.1 + 95075 0.66 0.433191
Target:  5'- cGCGCCuGCgGUuCGCGGCCgCUUCUgCg -3'
miRNA:   3'- -CGCGGcCGgCGcGCGCCGG-GGGGAgG- -5'
10924 3' -69.2 NC_002794.1 + 60374 0.66 0.433191
Target:  5'- cCGCCGucgaCGCGCGCGGgCCCgaugCCCgcacaCCg -3'
miRNA:   3'- cGCGGCcg--GCGCGCGCC-GGG----GGGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 56173 0.66 0.433191
Target:  5'- cCGCCGGCCGUGC-CGGaCagguagCCCCa-- -3'
miRNA:   3'- cGCGGCCGGCGCGcGCC-Gg-----GGGGagg -5'
10924 3' -69.2 NC_002794.1 + 78939 0.66 0.433191
Target:  5'- gGCGUCGGCUccgGCGuCGuCGGCgUCCCCg-- -3'
miRNA:   3'- -CGCGGCCGG---CGC-GC-GCCG-GGGGGagg -5'
10924 3' -69.2 NC_002794.1 + 161809 0.66 0.425227
Target:  5'- cGgGCCGGcCCGCGCaCGaCCCgCCguUCCc -3'
miRNA:   3'- -CgCGGCC-GGCGCGcGCcGGGgGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 50334 0.66 0.425227
Target:  5'- -gGCCGGCCcgaGCGCcucgGGCgCCCCgagcggCCc -3'
miRNA:   3'- cgCGGCCGGcg-CGCG----CCGgGGGGa-----GG- -5'
10924 3' -69.2 NC_002794.1 + 99178 0.66 0.425227
Target:  5'- ----gGGCCGC-CGC--CCCCCCUCCg -3'
miRNA:   3'- cgcggCCGGCGcGCGccGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 163694 0.66 0.425227
Target:  5'- aGCGgUGGCC-CGCcUGGCCCCggUCCc -3'
miRNA:   3'- -CGCgGCCGGcGCGcGCCGGGGggAGG- -5'
10924 3' -69.2 NC_002794.1 + 146587 0.66 0.425227
Target:  5'- gGCGCuccaaCGGCCcggGCGcCGCcGCCuCCCCgUCCc -3'
miRNA:   3'- -CGCG-----GCCGG---CGC-GCGcCGG-GGGG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 113808 0.66 0.425227
Target:  5'- gGCGgCGGCgGCGuCGUccucGGCCUcgccggCCCUCUc -3'
miRNA:   3'- -CGCgGCCGgCGC-GCG----CCGGG------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 1545 0.66 0.425227
Target:  5'- aGCGCCuGCCGCaGCGgauCGcGCCacgggCUCUCCg -3'
miRNA:   3'- -CGCGGcCGGCG-CGC---GC-CGGg----GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 137303 0.66 0.425227
Target:  5'- cGCuGCUGGCgCGCuGCGCGaacGCCUaCUUCCa -3'
miRNA:   3'- -CG-CGGCCG-GCG-CGCGC---CGGGgGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 113147 0.66 0.425227
Target:  5'- cGCGCCGaggacGCCGCGCcaccacucgccGCGaGCCgCCgCCaCCg -3'
miRNA:   3'- -CGCGGC-----CGGCGCG-----------CGC-CGG-GG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 127643 0.66 0.420491
Target:  5'- aGCGCUGGuaCCGCuaccUGCGGaCgcagcgccccgaccuCCCCCUCCu -3'
miRNA:   3'- -CGCGGCC--GGCGc---GCGCC-G---------------GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 112988 0.66 0.417352
Target:  5'- cGCGaCCGcGaCCGUGCGC-GCCUCgCgUCCg -3'
miRNA:   3'- -CGC-GGC-C-GGCGCGCGcCGGGG-GgAGG- -5'
10924 3' -69.2 NC_002794.1 + 94180 0.66 0.417352
Target:  5'- aCGCCGGCgGaGCGCGaGCCCgagCCggcgCCc -3'
miRNA:   3'- cGCGGCCGgCgCGCGC-CGGGg--GGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 67847 0.66 0.417352
Target:  5'- uCGUCGGCCGCccCGuCGGCUgacaCCCCgcgggCCa -3'
miRNA:   3'- cGCGGCCGGCGc-GC-GCCGG----GGGGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.