miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 58707 0.66 0.417352
Target:  5'- -gGCCGGCCGCcCuCGGUCCCgg-CCg -3'
miRNA:   3'- cgCGGCCGGCGcGcGCCGGGGggaGG- -5'
10924 3' -69.2 NC_002794.1 + 192637 0.66 0.417352
Target:  5'- -aGCCaGCaaaauggggaaGCGgGCGGUCCCCCaCCc -3'
miRNA:   3'- cgCGGcCGg----------CGCgCGCCGGGGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 102836 0.66 0.417352
Target:  5'- aGCGgCGGaacCCgGUGCGCGGCUgCCUggCCu -3'
miRNA:   3'- -CGCgGCC---GG-CGCGCGCCGGgGGGa-GG- -5'
10924 3' -69.2 NC_002794.1 + 114720 0.66 0.417352
Target:  5'- ---aCGGCCGCuCcaucCGGCUCCCCUUCa -3'
miRNA:   3'- cgcgGCCGGCGcGc---GCCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 94615 0.66 0.417352
Target:  5'- cGCuCCGGCgcgcaGCGgGgGGCCgCCC-CCg -3'
miRNA:   3'- -CGcGGCCGg----CGCgCgCCGGgGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 3543 0.66 0.417352
Target:  5'- cGCGCUcGCCGC-CGCcGCCgCuUCCUCCu -3'
miRNA:   3'- -CGCGGcCGGCGcGCGcCGG-G-GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 67847 0.66 0.417352
Target:  5'- uCGUCGGCCGCccCGuCGGCUgacaCCCCgcgggCCa -3'
miRNA:   3'- cGCGGCCGGCGc-GC-GCCGG----GGGGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 94180 0.66 0.417352
Target:  5'- aCGCCGGCgGaGCGCGaGCCCgagCCggcgCCc -3'
miRNA:   3'- cGCGGCCGgCgCGCGC-CGGGg--GGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 112988 0.66 0.417352
Target:  5'- cGCGaCCGcGaCCGUGCGC-GCCUCgCgUCCg -3'
miRNA:   3'- -CGC-GGC-C-GGCGCGCGcCGGGG-GgAGG- -5'
10924 3' -69.2 NC_002794.1 + 52296 0.66 0.417352
Target:  5'- gGC-CCaGCCGUGCGC-GCCgUCCUCg -3'
miRNA:   3'- -CGcGGcCGGCGCGCGcCGGgGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 159357 0.66 0.416569
Target:  5'- aGCGCaccaccuCGGCCaGCGUGUcGCCCgucgCCUCCc -3'
miRNA:   3'- -CGCG-------GCCGG-CGCGCGcCGGGg---GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 164520 0.66 0.415006
Target:  5'- gGCGCCcGCCGUGUccGCcGCCCgcucgucgaagucgUCCUCCu -3'
miRNA:   3'- -CGCGGcCGGCGCG--CGcCGGG--------------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 187533 0.66 0.415006
Target:  5'- cGCGCC--CCGCGCcaaacgccccaaguGCaGcCCCCCCUUCg -3'
miRNA:   3'- -CGCGGccGGCGCG--------------CGcC-GGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 128944 0.66 0.409565
Target:  5'- --uCCGGCCGC-CGa--UCCCCCUCCg -3'
miRNA:   3'- cgcGGCCGGCGcGCgccGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 155528 0.66 0.409565
Target:  5'- cCGCCGcGCggaCGCGCcaccgGCGGCgCCgCCUCUc -3'
miRNA:   3'- cGCGGC-CG---GCGCG-----CGCCGgGG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 172914 0.66 0.409565
Target:  5'- -gGCUGGCCGaCGgGcCGGCgccguugucCCCUUUCCg -3'
miRNA:   3'- cgCGGCCGGC-GCgC-GCCG---------GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 88512 0.66 0.409565
Target:  5'- uGgGuCCGGUCGC-CGCGaGCgaUCUCCUCCg -3'
miRNA:   3'- -CgC-GGCCGGCGcGCGC-CG--GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 95760 0.66 0.409565
Target:  5'- cGCGUgCGGCgCGUGCaGCGGUgCUCCaUCUa -3'
miRNA:   3'- -CGCG-GCCG-GCGCG-CGCCGgGGGG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 106148 0.66 0.409565
Target:  5'- gGCGCCGcgguGCCGaucCGCGCGGCgUCggUCCu -3'
miRNA:   3'- -CGCGGC----CGGC---GCGCGCCGgGGggAGG- -5'
10924 3' -69.2 NC_002794.1 + 128845 0.66 0.409565
Target:  5'- -aGuCCGGCgGCG-GCGGCCggcUCCCgCCg -3'
miRNA:   3'- cgC-GGCCGgCGCgCGCCGG---GGGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.