miRNA display CGI


Results 61 - 80 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 106148 0.66 0.409565
Target:  5'- gGCGCCGcgguGCCGaucCGCGCGGCgUCggUCCu -3'
miRNA:   3'- -CGCGGC----CGGC---GCGCGCCGgGGggAGG- -5'
10924 3' -69.2 NC_002794.1 + 89608 0.66 0.408791
Target:  5'- cCGCCGcgaaccggcgagcGCCGCGCGUcGCgCCgCCUCg -3'
miRNA:   3'- cGCGGC-------------CGGCGCGCGcCGgGG-GGAGg -5'
10924 3' -69.2 NC_002794.1 + 57445 0.66 0.406476
Target:  5'- uCGCCGGCCGCcgacucgucgagccGCgguggcgGCGGCgCCUCggCCu -3'
miRNA:   3'- cGCGGCCGGCG--------------CG-------CGCCGgGGGGa-GG- -5'
10924 3' -69.2 NC_002794.1 + 2123 0.66 0.404937
Target:  5'- uCGCCGcCCGCGgcuucggcgagcgacCGcCGGCCCCgCUCg -3'
miRNA:   3'- cGCGGCcGGCGC---------------GC-GCCGGGGgGAGg -5'
10924 3' -69.2 NC_002794.1 + 52743 0.66 0.40187
Target:  5'- cCGCuCGGCCGUgGCGCaggucucgGGCCaCUCC-CCg -3'
miRNA:   3'- cGCG-GCCGGCG-CGCG--------CCGG-GGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 65244 0.66 0.40187
Target:  5'- uGgGCCGGUUgacgguguucgGCGuCGcCGGCCCgCCCgCCg -3'
miRNA:   3'- -CgCGGCCGG-----------CGC-GC-GCCGGG-GGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 172149 0.66 0.40187
Target:  5'- aGCGUCccgaaCCGCGCGCggcgGGCCCgacguaCCUUCCg -3'
miRNA:   3'- -CGCGGcc---GGCGCGCG----CCGGG------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 93386 0.66 0.40187
Target:  5'- cGCGUCGG-CGUGC-CGGCCggCUUCCa -3'
miRNA:   3'- -CGCGGCCgGCGCGcGCCGGggGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 134039 0.66 0.40187
Target:  5'- cCGgCGGCCGcCG-GCGGCCggcgucacuCCgCUCCg -3'
miRNA:   3'- cGCgGCCGGC-GCgCGCCGG---------GGgGAGG- -5'
10924 3' -69.2 NC_002794.1 + 157403 0.66 0.40187
Target:  5'- -aGCCGG-CGCGgcCGCGGCgCgCCCUUUa -3'
miRNA:   3'- cgCGGCCgGCGC--GCGCCGgG-GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 178424 0.67 0.394267
Target:  5'- cGCGCC-GCCG-GCGCucgGGCCCgCgaCCg -3'
miRNA:   3'- -CGCGGcCGGCgCGCG---CCGGGgGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 117912 0.67 0.394267
Target:  5'- gGCGCCGcgaucgccGCCGuCGC-CGaGCCgaCUCCUCCg -3'
miRNA:   3'- -CGCGGC--------CGGC-GCGcGC-CGG--GGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 146389 0.67 0.394267
Target:  5'- cGUGaCCGGCCGC-CGCGGgUCUgucgaCCUCg -3'
miRNA:   3'- -CGC-GGCCGGCGcGCGCCgGGG-----GGAGg -5'
10924 3' -69.2 NC_002794.1 + 61180 0.67 0.394267
Target:  5'- aCG-CGGCCGCGCuuGGCUcgaCCgCCUCUg -3'
miRNA:   3'- cGCgGCCGGCGCGcgCCGG---GG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 52118 0.67 0.394267
Target:  5'- cCGCCGGaCGCGcCGCcggggGGCUCCgCUCg -3'
miRNA:   3'- cGCGGCCgGCGC-GCG-----CCGGGGgGAGg -5'
10924 3' -69.2 NC_002794.1 + 94411 0.67 0.38975
Target:  5'- aCGCCGG-CGCGCccgcccgaaacgccgGCGcGCCCgCCCgaaacgCCg -3'
miRNA:   3'- cGCGGCCgGCGCG---------------CGC-CGGG-GGGa-----GG- -5'
10924 3' -69.2 NC_002794.1 + 49545 0.67 0.386758
Target:  5'- cGgGCUcGCCGaCGCGCGGCggauucgaCCCCgUCg -3'
miRNA:   3'- -CgCGGcCGGC-GCGCGCCG--------GGGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 74376 0.67 0.386758
Target:  5'- cCGCCGGuUCG-GaCGCGGCCUCCg-CCg -3'
miRNA:   3'- cGCGGCC-GGCgC-GCGCCGGGGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 59845 0.67 0.386758
Target:  5'- cCGCUGGUCaCuCGCGuGCCCCgUUCCg -3'
miRNA:   3'- cGCGGCCGGcGcGCGC-CGGGGgGAGG- -5'
10924 3' -69.2 NC_002794.1 + 171917 0.67 0.386758
Target:  5'- aGC-CCGGCCGCgGCGCacuuGGCUCCgagCCa -3'
miRNA:   3'- -CGcGGCCGGCG-CGCG----CCGGGGggaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.