miRNA display CGI


Results 81 - 100 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 74376 0.67 0.386758
Target:  5'- cCGCCGGuUCG-GaCGCGGCCUCCg-CCg -3'
miRNA:   3'- cGCGGCC-GGCgC-GCGCCGGGGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 49545 0.67 0.386758
Target:  5'- cGgGCUcGCCGaCGCGCGGCggauucgaCCCCgUCg -3'
miRNA:   3'- -CgCGGcCGGC-GCGCGCCG--------GGGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 183680 0.67 0.386758
Target:  5'- cCGCCGacGCCGC-CGCGGCCgggcgCCgCUCg -3'
miRNA:   3'- cGCGGC--CGGCGcGCGCCGG-----GGgGAGg -5'
10924 3' -69.2 NC_002794.1 + 46628 0.67 0.386012
Target:  5'- gGCGCCGccGCCGuCGCcggggucGCGGCgccaCCaCCCUCg -3'
miRNA:   3'- -CGCGGC--CGGC-GCG-------CGCCG----GG-GGGAGg -5'
10924 3' -69.2 NC_002794.1 + 137465 0.67 0.384524
Target:  5'- gGCGCCaGCUGCuggagcacgccaagGUGCGGCCgCCg-CCa -3'
miRNA:   3'- -CGCGGcCGGCG--------------CGCGCCGGgGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 123314 0.67 0.379344
Target:  5'- cGCGCgUGGUCGCGCaacGCGGCCgggaagagCCCgC-CCa -3'
miRNA:   3'- -CGCG-GCCGGCGCG---CGCCGG--------GGG-GaGG- -5'
10924 3' -69.2 NC_002794.1 + 15870 0.67 0.379344
Target:  5'- gGCGgUGGCCGCGacgGCGGgCCCgg-CCa -3'
miRNA:   3'- -CGCgGCCGGCGCg--CGCCgGGGggaGG- -5'
10924 3' -69.2 NC_002794.1 + 179559 0.67 0.379344
Target:  5'- -aGCCuGGCgGC-CGCGGCcggcuggauCCCCCUgCCc -3'
miRNA:   3'- cgCGG-CCGgCGcGCGCCG---------GGGGGA-GG- -5'
10924 3' -69.2 NC_002794.1 + 144482 0.67 0.379344
Target:  5'- cCGuCCGGCCG-GCGacaGGCg-CCCUCCg -3'
miRNA:   3'- cGC-GGCCGGCgCGCg--CCGggGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 132484 0.67 0.378608
Target:  5'- cGCGCCGcugccccGCCGCccCGCuGCUCCCCguuUCCc -3'
miRNA:   3'- -CGCGGC-------CGGCGc-GCGcCGGGGGG---AGG- -5'
10924 3' -69.2 NC_002794.1 + 178234 0.67 0.377138
Target:  5'- cCGCCGcggcgagcgaucccGCCGC-CGCGGCCgCCgCCaCCg -3'
miRNA:   3'- cGCGGC--------------CGGCGcGCGCCGG-GG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 14084 0.67 0.372025
Target:  5'- gGCGCCGcGCCGcCGCGUcucguucgGGCCUUggaUCCa -3'
miRNA:   3'- -CGCGGC-CGGC-GCGCG--------CCGGGGgg-AGG- -5'
10924 3' -69.2 NC_002794.1 + 176976 0.67 0.372025
Target:  5'- aCGCCGG-CGCGgaGC-GUCaCCCCUCCc -3'
miRNA:   3'- cGCGGCCgGCGCg-CGcCGG-GGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 181663 0.67 0.372025
Target:  5'- aGCGucCCGGCC-CGC-UGGCCgCCCCaacgCCa -3'
miRNA:   3'- -CGC--GGCCGGcGCGcGCCGG-GGGGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 79932 0.67 0.364804
Target:  5'- gGCG-CGGCgGCGgGcCGGCCCgCCgcgugucgCCg -3'
miRNA:   3'- -CGCgGCCGgCGCgC-GCCGGGgGGa-------GG- -5'
10924 3' -69.2 NC_002794.1 + 136271 0.67 0.364804
Target:  5'- cGCGCaCuGCC-CGCaGCaGCUCUCCUCCg -3'
miRNA:   3'- -CGCG-GcCGGcGCG-CGcCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 105355 0.67 0.364804
Target:  5'- -gGCCGuccccGCCGCGCGCuucGGCgCUCgUCUCCg -3'
miRNA:   3'- cgCGGC-----CGGCGCGCG---CCG-GGG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 102782 0.67 0.364804
Target:  5'- aGCGCCuguucCCGgGCuGCGGCCUCuCCUgCCu -3'
miRNA:   3'- -CGCGGcc---GGCgCG-CGCCGGGG-GGA-GG- -5'
10924 3' -69.2 NC_002794.1 + 94737 0.67 0.364804
Target:  5'- cCGCCGuGgCGCGCcUGGCCCgcaUCUCCc -3'
miRNA:   3'- cGCGGC-CgGCGCGcGCCGGGg--GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 157323 0.67 0.364804
Target:  5'- uCGCC-GCCGC-CGCcGCCUCCCcgCCa -3'
miRNA:   3'- cGCGGcCGGCGcGCGcCGGGGGGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.