miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 888 0.66 0.441241
Target:  5'- aCGCCGGCUcguacaggcacaGCGcCGCGcGCaCgCCCUgCCg -3'
miRNA:   3'- cGCGGCCGG------------CGC-GCGC-CG-GgGGGA-GG- -5'
10924 3' -69.2 NC_002794.1 + 1078 0.74 0.122593
Target:  5'- -gGCCGGCaCGCGCgcaGCGGCUCCCagugCCc -3'
miRNA:   3'- cgCGGCCG-GCGCG---CGCCGGGGGga--GG- -5'
10924 3' -69.2 NC_002794.1 + 1204 0.86 0.018149
Target:  5'- uGCGUCGGCUGCGcCG-GGUCCCCCUCCg -3'
miRNA:   3'- -CGCGGCCGGCGC-GCgCCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 1320 0.66 0.448558
Target:  5'- aGCGCCGccagcacGCC-CGCGCGGaacaggugaCCCacgCUCUCCg -3'
miRNA:   3'- -CGCGGC-------CGGcGCGCGCC---------GGG---GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 1357 0.66 0.441241
Target:  5'- cGCGcCCGGcCCGCGgccCGCGuGCCgCCggCCc -3'
miRNA:   3'- -CGC-GGCC-GGCGC---GCGC-CGGgGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 1410 0.71 0.218126
Target:  5'- -gGCCGcuccuuaaaccaguaGCCGCGCuccaGCGGCUccuccagccgCCCCUCCg -3'
miRNA:   3'- cgCGGC---------------CGGCGCG----CGCCGG----------GGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 1545 0.66 0.425227
Target:  5'- aGCGCCuGCCGCaGCGgauCGcGCCacgggCUCUCCg -3'
miRNA:   3'- -CGCGGcCGGCG-CGC---GC-CGGg----GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 1880 0.66 0.409565
Target:  5'- cCGCCgcGGCCGCuacCGCcGCCCCCggCUUCg -3'
miRNA:   3'- cGCGG--CCGGCGc--GCGcCGGGGG--GAGG- -5'
10924 3' -69.2 NC_002794.1 + 2022 0.69 0.262711
Target:  5'- gGCGCCGGCacuuauuauaGUGUGCccacCCaCCCCUCCc -3'
miRNA:   3'- -CGCGGCCGg---------CGCGCGcc--GG-GGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 2123 0.66 0.404937
Target:  5'- uCGCCGcCCGCGgcuucggcgagcgacCGcCGGCCCCgCUCg -3'
miRNA:   3'- cGCGGCcGGCGC---------------GC-GCCGGGGgGAGg -5'
10924 3' -69.2 NC_002794.1 + 2890 0.68 0.336898
Target:  5'- -aGCCGuGCaggaccaGgGCGCGGUCgCCCUCg -3'
miRNA:   3'- cgCGGC-CGg------CgCGCGCCGGgGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 3181 0.66 0.417352
Target:  5'- aGCGCCGGCCGcCGUcguacgucuucaGCaGCCCgCa-CCg -3'
miRNA:   3'- -CGCGGCCGGC-GCG------------CGcCGGGgGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 3409 0.68 0.31058
Target:  5'- cGCGCCucgcaGUCGCGCGCcaccagcgccGaGCCCUCgUCCg -3'
miRNA:   3'- -CGCGGc----CGGCGCGCG----------C-CGGGGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 3543 0.66 0.417352
Target:  5'- cGCGCUcGCCGC-CGCcGCCgCuUCCUCCu -3'
miRNA:   3'- -CGCGGcCGGCGcGCGcCGG-G-GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 4189 0.72 0.189283
Target:  5'- gGCGCCGGCagcgGCG-GCGGCgUgCCCUCg -3'
miRNA:   3'- -CGCGGCCGg---CGCgCGCCG-GgGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 4346 0.75 0.119768
Target:  5'- gGUGCCaGcGCCGgGCGuCGGCCCgCgCCUCCc -3'
miRNA:   3'- -CGCGG-C-CGGCgCGC-GCCGGG-G-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 4488 0.73 0.161628
Target:  5'- cGgGCCGGacccuCCGCGCccGCGGCCgCCCaCCa -3'
miRNA:   3'- -CgCGGCC-----GGCGCG--CGCCGGgGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 5122 0.66 0.448558
Target:  5'- aGCGCCcGCCGCcgucucgacggggGCgGCGGCCgCgCgUCCc -3'
miRNA:   3'- -CGCGGcCGGCG-------------CG-CGCCGGgG-GgAGG- -5'
10924 3' -69.2 NC_002794.1 + 5193 0.69 0.291888
Target:  5'- cGCGCCcGCCGCGcCGCcgGGUCUCCacgcacacCUCCc -3'
miRNA:   3'- -CGCGGcCGGCGC-GCG--CCGGGGG--------GAGG- -5'
10924 3' -69.2 NC_002794.1 + 5502 0.76 0.099264
Target:  5'- uCGUCGGCCGCGCgGCGcagcggguGCUCCCgCUCCu -3'
miRNA:   3'- cGCGGCCGGCGCG-CGC--------CGGGGG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.