miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 5660 0.66 0.449375
Target:  5'- cGCGCUccaGcGCCGCGCGCacccgccgGGCgCUCCggucgUCCa -3'
miRNA:   3'- -CGCGG---C-CGGCGCGCG--------CCGgGGGG-----AGG- -5'
10924 3' -69.2 NC_002794.1 + 5723 0.69 0.29802
Target:  5'- cGCGCCGauaccaCGCGUacugcuggcgGCGGCUCUCCUCg -3'
miRNA:   3'- -CGCGGCcg----GCGCG----------CGCCGGGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 5952 0.69 0.291888
Target:  5'- aGCGCC-GCCGCGCGaCcGCCCgCUCgCCc -3'
miRNA:   3'- -CGCGGcCGGCGCGC-GcCGGG-GGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 6202 0.69 0.285856
Target:  5'- -aGCCGGCUG-GCcgaGCGGUCgCCCCggCCg -3'
miRNA:   3'- cgCGGCCGGCgCG---CGCCGG-GGGGa-GG- -5'
10924 3' -69.2 NC_002794.1 + 6282 0.71 0.216218
Target:  5'- -gGCCGGcCCGgGC-CGGCgCCCCUUa -3'
miRNA:   3'- cgCGGCC-GGCgCGcGCCGgGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 6682 0.72 0.189283
Target:  5'- aCGUagaUGGCCGCGUGC-GCCCCCCa-- -3'
miRNA:   3'- cGCG---GCCGGCGCGCGcCGGGGGGagg -5'
10924 3' -69.2 NC_002794.1 + 7521 0.71 0.202362
Target:  5'- cCGCCGGCgGCGcCGUcGCgCCCgUCCg -3'
miRNA:   3'- cGCGGCCGgCGC-GCGcCGgGGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 7960 0.67 0.350654
Target:  5'- cGCGCgGuGCCGCuCGCccgccgGGCCCCgCCgcgaCCg -3'
miRNA:   3'- -CGCGgC-CGGCGcGCG------CCGGGG-GGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 8015 0.79 0.060549
Target:  5'- cGCGCCGagggcucugcccaGCCGCGCGCGGCUCgccgcuagcuauauaCCCUCUc -3'
miRNA:   3'- -CGCGGC-------------CGGCGCGCGCCGGG---------------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 8299 0.68 0.341668
Target:  5'- cCGCCGucgggcccguacccGCCGUcgGCGCGGCCgCCgUCg -3'
miRNA:   3'- cGCGGC--------------CGGCG--CGCGCCGGgGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 8380 0.69 0.27351
Target:  5'- cGCGCCgggccgaggacgaGGCCGCGCagGCGGCCagggcgCCCgcggaggaaCUCCc -3'
miRNA:   3'- -CGCGG-------------CCGGCGCG--CGCCGG------GGG---------GAGG- -5'
10924 3' -69.2 NC_002794.1 + 8900 0.68 0.330169
Target:  5'- nCGCUGGCCGCcgccuccagcaGCGCGcGCaCCagCUCCg -3'
miRNA:   3'- cGCGGCCGGCG-----------CGCGC-CG-GGggGAGG- -5'
10924 3' -69.2 NC_002794.1 + 8930 0.7 0.241112
Target:  5'- uGCGCCGccaccGCCGC-CaCGGCCCCCgggCCg -3'
miRNA:   3'- -CGCGGC-----CGGCGcGcGCCGGGGGga-GG- -5'
10924 3' -69.2 NC_002794.1 + 9210 0.73 0.147508
Target:  5'- cGgGUCGGCCGCGCGCaccccguacacGGCgCCCgCCacgUCCa -3'
miRNA:   3'- -CgCGGCCGGCGCGCG-----------CCG-GGG-GG---AGG- -5'
10924 3' -69.2 NC_002794.1 + 9306 0.68 0.343726
Target:  5'- cGCGCCcGuuGCGaucguaGCGGUUCaCCUCCg -3'
miRNA:   3'- -CGCGGcCggCGCg-----CGCCGGGgGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 9358 0.74 0.137347
Target:  5'- cGCGCCuccccGCCGUggaagcaGCGCGGCaCCUUCUCCa -3'
miRNA:   3'- -CGCGGc----CGGCG-------CGCGCCG-GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 9558 0.72 0.173005
Target:  5'- gGCgGCCGGUCGC-CGCGGCgCgcucgUCCUCCa -3'
miRNA:   3'- -CG-CGGCCGGCGcGCGCCGgG-----GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 9754 0.68 0.330169
Target:  5'- uCGCCGucGCCGC-CGCcgGGUCCCCggauCUCCa -3'
miRNA:   3'- cGCGGC--CGGCGcGCG--CCGGGGG----GAGG- -5'
10924 3' -69.2 NC_002794.1 + 9930 0.68 0.31701
Target:  5'- cCGCCGGCCacccgccagGCuCGCGGCCgCgCCCguuUCCc -3'
miRNA:   3'- cGCGGCCGG---------CGcGCGCCGG-G-GGG---AGG- -5'
10924 3' -69.2 NC_002794.1 + 10075 0.69 0.272933
Target:  5'- aCGUCGGCCgGCGCGgGGaCCCacaucgccgggaUCUCCg -3'
miRNA:   3'- cGCGGCCGG-CGCGCgCC-GGGg-----------GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.