miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 10107 0.75 0.119768
Target:  5'- cGCGuCCaGCCGCcgGCGCGGCCgCCCgUCa -3'
miRNA:   3'- -CGC-GGcCGGCG--CGCGCCGG-GGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 10301 0.8 0.049536
Target:  5'- cGCGCCccgcccugccgcGGCaggGCGCGCGGCuCUCCCUCCc -3'
miRNA:   3'- -CGCGG------------CCGg--CGCGCGCCG-GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 10804 0.66 0.449375
Target:  5'- aGCGUgGucugcaGCCGC-CGCGGCCCgUCgCCg -3'
miRNA:   3'- -CGCGgC------CGGCGcGCGCCGGGgGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 10906 0.74 0.137665
Target:  5'- uGCGCCGGCC-CGCGCaGCCgCUCgUCg -3'
miRNA:   3'- -CGCGGCCGGcGCGCGcCGG-GGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 11275 0.67 0.364804
Target:  5'- gGCGgCGGCCaCGCGCGGCCgCgggaUCg -3'
miRNA:   3'- -CGCgGCCGGcGCGCGCCGGgGgg--AGg -5'
10924 3' -69.2 NC_002794.1 + 11350 0.73 0.147169
Target:  5'- gGCGCgGGCCccGCGCGCGGCgcgggcgacgccgCCCaCCgCCg -3'
miRNA:   3'- -CGCGgCCGG--CGCGCGCCG-------------GGG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 11394 0.67 0.350654
Target:  5'- cCGCgGGCCGCGCGaaCGGCgcgcggggCCCCggacgCCc -3'
miRNA:   3'- cGCGgCCGGCGCGC--GCCGg-------GGGGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 12168 0.72 0.168752
Target:  5'- aGCGCCcGCCGCGCGCGGCggcacagCCacaCCgucagCCc -3'
miRNA:   3'- -CGCGGcCGGCGCGCGCCG-------GGg--GGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 12260 0.75 0.117004
Target:  5'- gGCGgaggggGGCCGCGCGCGGCcggcgCCCCCgcgCCc -3'
miRNA:   3'- -CGCgg----CCGGCGCGCGCCG-----GGGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 12335 0.69 0.268351
Target:  5'- uCG-CGGCCGUGCGCG--CCCCgUCCg -3'
miRNA:   3'- cGCgGCCGGCGCGCGCcgGGGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 12397 0.7 0.251721
Target:  5'- gGCGCCcgcccGCCGCGagucCGCGGCCCgaUCC-CCg -3'
miRNA:   3'- -CGCGGc----CGGCGC----GCGCCGGG--GGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 12849 0.68 0.31058
Target:  5'- gGCGCC--CCGCGCGCGcccGCCgCCCCg-- -3'
miRNA:   3'- -CGCGGccGGCGCGCGC---CGG-GGGGagg -5'
10924 3' -69.2 NC_002794.1 + 12914 0.67 0.349957
Target:  5'- gGCGCCGggcucgaGCCGaCG-GCGGCCggCUCCUCg -3'
miRNA:   3'- -CGCGGC-------CGGC-GCgCGCCGG--GGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 13505 0.7 0.246369
Target:  5'- cGgGCgGGugaCCGgGCGCacGGCCCCCCggUCCc -3'
miRNA:   3'- -CgCGgCC---GGCgCGCG--CCGGGGGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 13595 0.69 0.274088
Target:  5'- cGCGCCGaGUCcCGaGCGGCCUCCCa-- -3'
miRNA:   3'- -CGCGGC-CGGcGCgCGCCGGGGGGagg -5'
10924 3' -69.2 NC_002794.1 + 13956 0.68 0.31058
Target:  5'- aGCGCgGGucguacaccacCCGCGCGaCGGCCgucUCCCgggagCCg -3'
miRNA:   3'- -CGCGgCC-----------GGCGCGC-GCCGG---GGGGa----GG- -5'
10924 3' -69.2 NC_002794.1 + 14084 0.67 0.372025
Target:  5'- gGCGCCGcGCCGcCGCGUcucguucgGGCCUUggaUCCa -3'
miRNA:   3'- -CGCGGC-CGGC-GCGCG--------CCGGGGgg-AGG- -5'
10924 3' -69.2 NC_002794.1 + 14973 0.69 0.279335
Target:  5'- cGCGCCcggucucGGCCGCGgacucggcCGCGGUCUCgCCggcgCCg -3'
miRNA:   3'- -CGCGG-------CCGGCGC--------GCGCCGGGG-GGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 15179 0.66 0.441241
Target:  5'- uCGCCGGCCGCuCcCGGCgCCCg--- -3'
miRNA:   3'- cGCGGCCGGCGcGcGCCGgGGGgagg -5'
10924 3' -69.2 NC_002794.1 + 15252 0.7 0.257168
Target:  5'- cGCGCCgcgGGCCaCGacacgGCGGCCCaCCCgcgcUCCa -3'
miRNA:   3'- -CGCGG---CCGGcGCg----CGCCGGG-GGG----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.