miRNA display CGI


Results 61 - 80 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 15870 0.67 0.379344
Target:  5'- gGCGgUGGCCGCGacgGCGGgCCCgg-CCa -3'
miRNA:   3'- -CGCgGCCGGCGCg--CGCCgGGGggaGG- -5'
10924 3' -69.2 NC_002794.1 + 42023 0.69 0.268351
Target:  5'- uGUGuCCGuG-CGCGCGuuGCCCCCCgCCg -3'
miRNA:   3'- -CGC-GGC-CgGCGCGCgcCGGGGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 42498 0.66 0.449375
Target:  5'- cGCGgcCCGGCUGCGCGCccucguGGUCgaUCUgUCCg -3'
miRNA:   3'- -CGC--GGCCGGCGCGCG------CCGG--GGGgAGG- -5'
10924 3' -69.2 NC_002794.1 + 43073 0.68 0.32354
Target:  5'- aCGCUGaCCGCGCGCGaGCUgCUgCUCCc -3'
miRNA:   3'- cGCGGCcGGCGCGCGC-CGGgGG-GAGG- -5'
10924 3' -69.2 NC_002794.1 + 43290 0.68 0.32354
Target:  5'- gGCGCUucaccGCCGCG-GCGGCCgCCaCgUCCc -3'
miRNA:   3'- -CGCGGc----CGGCGCgCGCCGG-GG-GgAGG- -5'
10924 3' -69.2 NC_002794.1 + 43914 0.71 0.202362
Target:  5'- cCGCCGcCCGCGaCGaCGGCCCCgggugCUCCu -3'
miRNA:   3'- cGCGGCcGGCGC-GC-GCCGGGGg----GAGG- -5'
10924 3' -69.2 NC_002794.1 + 44117 0.68 0.32354
Target:  5'- cCGCCGGUCGCcuCGCGcGCUCgUCCUCg -3'
miRNA:   3'- cGCGGCCGGCGc-GCGC-CGGG-GGGAGg -5'
10924 3' -69.2 NC_002794.1 + 44268 0.7 0.230879
Target:  5'- cGCGCCGccGCCGCGggccCGCGGUUCCUCggCUg -3'
miRNA:   3'- -CGCGGC--CGGCGC----GCGCCGGGGGGa-GG- -5'
10924 3' -69.2 NC_002794.1 + 46583 0.71 0.206893
Target:  5'- cCGCCGGCgGCGCgGCGGCUCgCUCa-- -3'
miRNA:   3'- cGCGGCCGgCGCG-CGCCGGG-GGGagg -5'
10924 3' -69.2 NC_002794.1 + 46628 0.67 0.386012
Target:  5'- gGCGCCGccGCCGuCGCcggggucGCGGCgccaCCaCCCUCg -3'
miRNA:   3'- -CGCGGC--CGGC-GCG-------CGCCG----GG-GGGAGg -5'
10924 3' -69.2 NC_002794.1 + 47266 0.68 0.31701
Target:  5'- -gGCCGGCCGC-CGUccacggacucGGCCCUgcagaucugggUCUCCg -3'
miRNA:   3'- cgCGGCCGGCGcGCG----------CCGGGG-----------GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 47313 0.75 0.106533
Target:  5'- uCGUCGGCUGCGCGCGGCUCUUucugCUCg -3'
miRNA:   3'- cGCGGCCGGCGCGCGCCGGGGG----GAGg -5'
10924 3' -69.2 NC_002794.1 + 47655 0.7 0.235949
Target:  5'- gGCGCCGGCgCGCGCucgauCGGUCUCCggUCg -3'
miRNA:   3'- -CGCGGCCG-GCGCGc----GCCGGGGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 48866 0.68 0.31701
Target:  5'- cCGCCGGCCGaCGUcggcggcgGCGGCCgCCggcgCUCg -3'
miRNA:   3'- cGCGGCCGGC-GCG--------CGCCGGgGG----GAGg -5'
10924 3' -69.2 NC_002794.1 + 48921 0.67 0.35768
Target:  5'- aGCGCuCGGuCUG-GCGUGGCUCuCUCUUCa -3'
miRNA:   3'- -CGCG-GCC-GGCgCGCGCCGGG-GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 49545 0.67 0.386758
Target:  5'- cGgGCUcGCCGaCGCGCGGCggauucgaCCCCgUCg -3'
miRNA:   3'- -CgCGGcCGGC-GCGCGCCG--------GGGGgAGg -5'
10924 3' -69.2 NC_002794.1 + 49869 0.66 0.433191
Target:  5'- aGCGCCcagaacGGCCGC-CGgGGCCggagacgccgUCCCagUCCg -3'
miRNA:   3'- -CGCGG------CCGGCGcGCgCCGG----------GGGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 50334 0.66 0.425227
Target:  5'- -gGCCGGCCcgaGCGCcucgGGCgCCCCgagcggCCc -3'
miRNA:   3'- cgCGGCCGGcg-CGCG----CCGgGGGGa-----GG- -5'
10924 3' -69.2 NC_002794.1 + 50459 0.69 0.29802
Target:  5'- cGCGCCGcGCgGCcuuaaaGCGCGGCgCgCCgCCg -3'
miRNA:   3'- -CGCGGC-CGgCG------CGCGCCGgGgGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 50678 0.69 0.279923
Target:  5'- gGUGUCGgagauggucGCCGCG-GCGGCCCUCCggcagcgcUCCu -3'
miRNA:   3'- -CGCGGC---------CGGCGCgCGCCGGGGGG--------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.