miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 195575 0.67 0.35768
Target:  5'- aCGgCGGCCcugGCGCGCcgaacgccgGGCCCgCC-CCa -3'
miRNA:   3'- cGCgGCCGG---CGCGCG---------CCGGGgGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 194969 0.72 0.176954
Target:  5'- cGCGCgGGCCGgGUGCcaacgccGCUCCCCgcgCCu -3'
miRNA:   3'- -CGCGgCCGGCgCGCGc------CGGGGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 194836 0.66 0.433191
Target:  5'- gGCauCCGGCC-CGCaCcacGCCCCCUUCCa -3'
miRNA:   3'- -CGc-GGCCGGcGCGcGc--CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 194566 0.75 0.1143
Target:  5'- -gGaCCGGCCGCugGCcaaaaugaggaaGCGuGCCCCCCUCCc -3'
miRNA:   3'- cgC-GGCCGGCG--CG------------CGC-CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 193373 0.67 0.386758
Target:  5'- gGCGauCCGGUgGC-CGgGGUccagaCCCCCUCCc -3'
miRNA:   3'- -CGC--GGCCGgCGcGCgCCG-----GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 193242 0.69 0.27351
Target:  5'- --cCCGGCCGCcgGCGCGcGUCCCCagcaaaugaggagCUCCu -3'
miRNA:   3'- cgcGGCCGGCG--CGCGC-CGGGGG-------------GAGG- -5'
10924 3' -69.2 NC_002794.1 + 192637 0.66 0.417352
Target:  5'- -aGCCaGCaaaauggggaaGCGgGCGGUCCCCCaCCc -3'
miRNA:   3'- cgCGGcCGg----------CGCgCGCCGGGGGGaGG- -5'
10924 3' -69.2 NC_002794.1 + 188930 0.77 0.082106
Target:  5'- -aGCCGcaGCCGcCGCGCGGCaCCCUCUCg -3'
miRNA:   3'- cgCGGC--CGGC-GCGCGCCG-GGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 187533 0.66 0.415006
Target:  5'- cGCGCC--CCGCGCcaaacgccccaaguGCaGcCCCCCCUUCg -3'
miRNA:   3'- -CGCGGccGGCGCG--------------CGcC-GGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 184216 0.73 0.144157
Target:  5'- aGCGacgggCGGCCGaCGaCGCGGCCCgCCggCCa -3'
miRNA:   3'- -CGCg----GCCGGC-GC-GCGCCGGGgGGa-GG- -5'
10924 3' -69.2 NC_002794.1 + 184055 0.68 0.343726
Target:  5'- gGCGCCGccgccgccgucGCCGCcuuCGCucCCCCCCUCg -3'
miRNA:   3'- -CGCGGC-----------CGGCGc--GCGccGGGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 183836 0.68 0.31058
Target:  5'- cCGCCGGCCcggGCGUcCGcGCCuuCCCCUgCCg -3'
miRNA:   3'- cGCGGCCGG---CGCGcGC-CGG--GGGGA-GG- -5'
10924 3' -69.2 NC_002794.1 + 183680 0.67 0.386758
Target:  5'- cCGCCGacGCCGC-CGCGGCCgggcgCCgCUCg -3'
miRNA:   3'- cGCGGC--CGGCGcGCGCCGG-----GGgGAGg -5'
10924 3' -69.2 NC_002794.1 + 183628 0.75 0.106533
Target:  5'- gGCGCCGGCgGCGCcguccGCGGCgCCgaUCCg -3'
miRNA:   3'- -CGCGGCCGgCGCG-----CGCCGgGGggAGG- -5'
10924 3' -69.2 NC_002794.1 + 182905 0.75 0.114033
Target:  5'- gGCGuuGGCCGUGUcggugacGUGGCCUUCUUCCu -3'
miRNA:   3'- -CGCggCCGGCGCG-------CGCCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 182505 0.69 0.291888
Target:  5'- gGCGCCccUCGCcCG-GGCCCUCCUCCc -3'
miRNA:   3'- -CGCGGccGGCGcGCgCCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 182047 0.74 0.128429
Target:  5'- gGC-CCGGCCgGCgGCGaCGGCCuCCuCCUCCu -3'
miRNA:   3'- -CGcGGCCGG-CG-CGC-GCCGG-GG-GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 181663 0.67 0.372025
Target:  5'- aGCGucCCGGCC-CGC-UGGCCgCCCCaacgCCa -3'
miRNA:   3'- -CGC--GGCCGGcGCGcGCCGG-GGGGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 181388 0.7 0.243204
Target:  5'- aGCGgCGcGCCGCGCucgcuguucgcggcgGCGGCCCgCgCUCg -3'
miRNA:   3'- -CGCgGC-CGGCGCG---------------CGCCGGGgG-GAGg -5'
10924 3' -69.2 NC_002794.1 + 180659 0.67 0.350654
Target:  5'- aCGaCCGcCCGCGaugGCGGCguCCCCCgUCCg -3'
miRNA:   3'- cGC-GGCcGGCGCg--CGCCG--GGGGG-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.