miRNA display CGI


Results 21 - 40 of 320 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 180592 0.74 0.128429
Target:  5'- cCGUCGGCgaGcCGCGCGG-CUCCCUCCg -3'
miRNA:   3'- cGCGGCCGg-C-GCGCGCCgGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 179559 0.67 0.379344
Target:  5'- -aGCCuGGCgGC-CGCGGCcggcuggauCCCCCUgCCc -3'
miRNA:   3'- cgCGG-CCGgCGcGCGCCG---------GGGGGA-GG- -5'
10924 3' -69.2 NC_002794.1 + 179129 0.66 0.417352
Target:  5'- uGCGCCGGCUcCGUcccaucuuGcCGGCCCCaCCg-- -3'
miRNA:   3'- -CGCGGCCGGcGCG--------C-GCCGGGG-GGagg -5'
10924 3' -69.2 NC_002794.1 + 178424 0.67 0.394267
Target:  5'- cGCGCC-GCCG-GCGCucgGGCCCgCgaCCg -3'
miRNA:   3'- -CGCGGcCGGCgCGCG---CCGGGgGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 178354 0.67 0.350654
Target:  5'- aCGCCGGCCGaGauCGGCg-CCCUCCu -3'
miRNA:   3'- cGCGGCCGGCgCgcGCCGggGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 178234 0.67 0.377138
Target:  5'- cCGCCGcggcgagcgaucccGCCGC-CGCGGCCgCCgCCaCCg -3'
miRNA:   3'- cGCGGC--------------CGGCGcGCGCCGG-GG-GGaGG- -5'
10924 3' -69.2 NC_002794.1 + 177613 0.69 0.3005
Target:  5'- cGCGCgCGGCCGaCcggcgaccgcgagauGCGCGGCgCCgagCCUUCg -3'
miRNA:   3'- -CGCG-GCCGGC-G---------------CGCGCCGgGG---GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 176976 0.67 0.372025
Target:  5'- aCGCCGG-CGCGgaGC-GUCaCCCCUCCc -3'
miRNA:   3'- cGCGGCCgGCGCg-CGcCGG-GGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 176607 0.71 0.193558
Target:  5'- uGUGCCGaCCgGC-CGCGGCCCCCguggcgcguCUCCu -3'
miRNA:   3'- -CGCGGCcGG-CGcGCGCCGGGGG---------GAGG- -5'
10924 3' -69.2 NC_002794.1 + 176534 0.78 0.064618
Target:  5'- cGCGCUGGCgaccCGCGCGcCGGUcaCCCCCUCg -3'
miRNA:   3'- -CGCGGCCG----GCGCGC-GCCG--GGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 176446 0.7 0.251721
Target:  5'- --cCCGGaUCGgGCGC-GCCCUCCUCCg -3'
miRNA:   3'- cgcGGCC-GGCgCGCGcCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 176333 0.79 0.060113
Target:  5'- aGCGCCGGCgCG-GCGCGGCCCgCCggugUCg -3'
miRNA:   3'- -CGCGGCCG-GCgCGCGCCGGGgGGa---GG- -5'
10924 3' -69.2 NC_002794.1 + 175904 0.69 0.268351
Target:  5'- cGUGCgGGCUucgaGCuGCGGCCgCCCUUCg -3'
miRNA:   3'- -CGCGgCCGGcg--CG-CGCCGGgGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 174199 0.68 0.330169
Target:  5'- gGCGgCGGUgGCG-GCGGCgguauucgCCCgCUCCg -3'
miRNA:   3'- -CGCgGCCGgCGCgCGCCG--------GGGgGAGG- -5'
10924 3' -69.2 NC_002794.1 + 174142 0.73 0.152317
Target:  5'- gGCGCUGcGUCGCGauCGCGaggccgaagcggugcGCCUCCCUCCa -3'
miRNA:   3'- -CGCGGC-CGGCGC--GCGC---------------CGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 173980 0.73 0.154069
Target:  5'- -gGCCGGCCGCGgggugucCGCGGCCUgCgUCg -3'
miRNA:   3'- cgCGGCCGGCGC-------GCGCCGGGgGgAGg -5'
10924 3' -69.2 NC_002794.1 + 173902 0.72 0.185092
Target:  5'- cCGUCGGCCGCuccCGCGGCgCCgucgUCUCCg -3'
miRNA:   3'- cGCGGCCGGCGc--GCGCCGgGG----GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 173521 0.68 0.330169
Target:  5'- --aCCGGUuuaCGCGCccGCaGCCCCUCUCCc -3'
miRNA:   3'- cgcGGCCG---GCGCG--CGcCGGGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 172991 0.7 0.235949
Target:  5'- cGUcCCGGCCGuCGCGCGcuuCCCUggCCUCCc -3'
miRNA:   3'- -CGcGGCCGGC-GCGCGCc--GGGG--GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 172914 0.66 0.409565
Target:  5'- -gGCUGGCCGaCGgGcCGGCgccguugucCCCUUUCCg -3'
miRNA:   3'- cgCGGCCGGC-GCgC-GCCG---------GGGGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.