miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10924 3' -69.2 NC_002794.1 + 172744 0.68 0.336898
Target:  5'- cCGuuGGCCuGCGUGUGaGUCCCCa-CCa -3'
miRNA:   3'- cGCggCCGG-CGCGCGC-CGGGGGgaGG- -5'
10924 3' -69.2 NC_002794.1 + 172236 0.75 0.111654
Target:  5'- gGCGcCCGGa--CGCGCGGCccucgaCCCCCUCCg -3'
miRNA:   3'- -CGC-GGCCggcGCGCGCCG------GGGGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 172149 0.66 0.40187
Target:  5'- aGCGUCccgaaCCGCGCGCggcgGGCCCgacguaCCUUCCg -3'
miRNA:   3'- -CGCGGcc---GGCGCGCG----CCGGG------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 171917 0.67 0.386758
Target:  5'- aGC-CCGGCCGCgGCGCacuuGGCUCCgagCCa -3'
miRNA:   3'- -CGcGGCCGGCG-CGCG----CCGGGGggaGG- -5'
10924 3' -69.2 NC_002794.1 + 168371 0.66 0.449375
Target:  5'- cGCGCCgaGGCCGCGC-CaGUCCaucauCCaUCCa -3'
miRNA:   3'- -CGCGG--CCGGCGCGcGcCGGGg----GG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 165781 0.69 0.268351
Target:  5'- cGC-CCGGUCgacgagGCGCGCGGCCggUCCCgacCCa -3'
miRNA:   3'- -CGcGGCCGG------CGCGCGCCGG--GGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 164520 0.66 0.415006
Target:  5'- gGCGCCcGCCGUGUccGCcGCCCgcucgucgaagucgUCCUCCu -3'
miRNA:   3'- -CGCGGcCGGCGCG--CGcCGGG--------------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 164455 0.69 0.29802
Target:  5'- cGCGCCcGCCGCGC-CcGCCgCCUUCg -3'
miRNA:   3'- -CGCGGcCGGCGCGcGcCGGgGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 164336 0.72 0.165343
Target:  5'- aGCuCCGGuuGCGCgGCGaGCCCCgacgUCUCCg -3'
miRNA:   3'- -CGcGGCCggCGCG-CGC-CGGGG----GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 163694 0.66 0.425227
Target:  5'- aGCGgUGGCC-CGCcUGGCCCCggUCCc -3'
miRNA:   3'- -CGCgGCCGGcGCGcGCCGGGGggAGG- -5'
10924 3' -69.2 NC_002794.1 + 163555 0.79 0.060113
Target:  5'- cGCGgCGGCCGCGCcggccGCGGCCggagacaagCCCUCCg -3'
miRNA:   3'- -CGCgGCCGGCGCG-----CGCCGGg--------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 161809 0.66 0.425227
Target:  5'- cGgGCCGGcCCGCGCaCGaCCCgCCguUCCc -3'
miRNA:   3'- -CgCGGCC-GGCGCGcGCcGGGgGG--AGG- -5'
10924 3' -69.2 NC_002794.1 + 161520 0.67 0.386758
Target:  5'- gGCGaCGGCCGCGC-CGuuccGCCCgCUCUaCCu -3'
miRNA:   3'- -CGCgGCCGGCGCGcGC----CGGG-GGGA-GG- -5'
10924 3' -69.2 NC_002794.1 + 161130 0.66 0.443673
Target:  5'- gGCGCgggCGGCCGCagagcgcgcgacgGCGCggugggacgcggcacGGCCgCCCgcgCCa -3'
miRNA:   3'- -CGCG---GCCGGCG-------------CGCG---------------CCGGgGGGa--GG- -5'
10924 3' -69.2 NC_002794.1 + 161052 0.69 0.279923
Target:  5'- -gGCCcgGGCCGCGCGacaccaCCCCCUCg -3'
miRNA:   3'- cgCGG--CCGGCGCGCgccg--GGGGGAGg -5'
10924 3' -69.2 NC_002794.1 + 160909 0.66 0.449375
Target:  5'- -gGCCcGCCGCGaccCGC-GCCUCCCgUCCc -3'
miRNA:   3'- cgCGGcCGGCGC---GCGcCGGGGGG-AGG- -5'
10924 3' -69.2 NC_002794.1 + 160868 0.75 0.116187
Target:  5'- uGCGCCGGCUGCGgGCccGGCacuauguacagcaaCCgCCUCCu -3'
miRNA:   3'- -CGCGGCCGGCGCgCG--CCG--------------GGgGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 160306 0.68 0.330169
Target:  5'- gGCGCuCGcGCgCGCGCGUgguGGCCCaggcguUCUUCCg -3'
miRNA:   3'- -CGCG-GC-CG-GCGCGCG---CCGGG------GGGAGG- -5'
10924 3' -69.2 NC_002794.1 + 159357 0.66 0.416569
Target:  5'- aGCGCaccaccuCGGCCaGCGUGUcGCCCgucgCCUCCc -3'
miRNA:   3'- -CGCG-------GCCGG-CGCGCGcCGGGg---GGAGG- -5'
10924 3' -69.2 NC_002794.1 + 158959 0.68 0.30425
Target:  5'- aGCGUCcagaGGUCGCgGCGcCGGCCCCgCgaCCg -3'
miRNA:   3'- -CGCGG----CCGGCG-CGC-GCCGGGG-GgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.