Results 1 - 20 of 320 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10924 | 3' | -69.2 | NC_002794.1 | + | 111682 | 0.81 | 0.041785 |
Target: 5'- aGCGCuCGGCCcgGCGCuCGGCCCgCCUCCc -3' miRNA: 3'- -CGCG-GCCGG--CGCGcGCCGGGgGGAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 1357 | 0.66 | 0.441241 |
Target: 5'- cGCGcCCGGcCCGCGgccCGCGuGCCgCCggCCc -3' miRNA: 3'- -CGC-GGCC-GGCGC---GCGC-CGGgGGgaGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 149753 | 0.66 | 0.441241 |
Target: 5'- aCGCCucguucuccccGCC-CGCGuCGGCuCCCCCgUCCg -3' miRNA: 3'- cGCGGc----------CGGcGCGC-GCCG-GGGGG-AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 94216 | 0.66 | 0.441241 |
Target: 5'- aGCGUgGGCgGgCGgGCGGCgguuagCCCgUCCg -3' miRNA: 3'- -CGCGgCCGgC-GCgCGCCGg-----GGGgAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 15179 | 0.66 | 0.441241 |
Target: 5'- uCGCCGGCCGCuCcCGGCgCCCg--- -3' miRNA: 3'- cGCGGCCGGCGcGcGCCGgGGGgagg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 95330 | 0.66 | 0.441241 |
Target: 5'- uCGgCGGCaccgaggagcaGCGgGCGGCCUUCC-CCg -3' miRNA: 3'- cGCgGCCGg----------CGCgCGCCGGGGGGaGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 78658 | 0.66 | 0.441241 |
Target: 5'- gGCGUCgGGCC-CGgGCGGCUCCgg-CCg -3' miRNA: 3'- -CGCGG-CCGGcGCgCGCCGGGGggaGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 158097 | 0.66 | 0.441241 |
Target: 5'- gGCGCCGGCgG-GaGCGGCCgUCgUCg -3' miRNA: 3'- -CGCGGCCGgCgCgCGCCGGgGGgAGg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 78939 | 0.66 | 0.433191 |
Target: 5'- gGCGUCGGCUccgGCGuCGuCGGCgUCCCCg-- -3' miRNA: 3'- -CGCGGCCGG---CGC-GC-GCCG-GGGGGagg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 161130 | 0.66 | 0.443673 |
Target: 5'- gGCGCgggCGGCCGCagagcgcgcgacgGCGCggugggacgcggcacGGCCgCCCgcgCCa -3' miRNA: 3'- -CGCG---GCCGGCG-------------CGCG---------------CCGGgGGGa--GG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 888 | 0.66 | 0.441241 |
Target: 5'- aCGCCGGCUcguacaggcacaGCGcCGCGcGCaCgCCCUgCCg -3' miRNA: 3'- cGCGGCCGG------------CGC-GCGC-CG-GgGGGA-GG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 83994 | 0.66 | 0.441241 |
Target: 5'- cCGCCagGGCCuuguaGCGCGCGGUgaCCUgaUCCa -3' miRNA: 3'- cGCGG--CCGG-----CGCGCGCCGggGGG--AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 5660 | 0.66 | 0.449375 |
Target: 5'- cGCGCUccaGcGCCGCGCGCacccgccgGGCgCUCCggucgUCCa -3' miRNA: 3'- -CGCGG---C-CGGCGCGCG--------CCGgGGGG-----AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 160909 | 0.66 | 0.449375 |
Target: 5'- -gGCCcGCCGCGaccCGC-GCCUCCCgUCCc -3' miRNA: 3'- cgCGGcCGGCGC---GCGcCGGGGGG-AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 168371 | 0.66 | 0.449375 |
Target: 5'- cGCGCCgaGGCCGCGC-CaGUCCaucauCCaUCCa -3' miRNA: 3'- -CGCGG--CCGGCGCGcGcCGGGg----GG-AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 10804 | 0.66 | 0.449375 |
Target: 5'- aGCGUgGucugcaGCCGC-CGCGGCCCgUCgCCg -3' miRNA: 3'- -CGCGgC------CGGCGcGCGCCGGGgGGaGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 42498 | 0.66 | 0.449375 |
Target: 5'- cGCGgcCCGGCUGCGCGCccucguGGUCgaUCUgUCCg -3' miRNA: 3'- -CGC--GGCCGGCGCGCG------CCGG--GGGgAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 86323 | 0.66 | 0.449375 |
Target: 5'- gGCGUCgGGCCGgGCGgacCGGUCUaCCUCg -3' miRNA: 3'- -CGCGG-CCGGCgCGC---GCCGGGgGGAGg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 5122 | 0.66 | 0.448558 |
Target: 5'- aGCGCCcGCCGCcgucucgacggggGCgGCGGCCgCgCgUCCc -3' miRNA: 3'- -CGCGGcCGGCG-------------CG-CGCCGGgG-GgAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 1320 | 0.66 | 0.448558 |
Target: 5'- aGCGCCGccagcacGCC-CGCGCGGaacaggugaCCCacgCUCUCCg -3' miRNA: 3'- -CGCGGC-------CGGcGCGCGCC---------GGG---GGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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