Results 41 - 60 of 320 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10924 | 3' | -69.2 | NC_002794.1 | + | 42498 | 0.66 | 0.449375 |
Target: 5'- cGCGgcCCGGCUGCGCGCccucguGGUCgaUCUgUCCg -3' miRNA: 3'- -CGC--GGCCGGCGCGCG------CCGG--GGGgAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 10804 | 0.66 | 0.449375 |
Target: 5'- aGCGUgGucugcaGCCGC-CGCGGCCCgUCgCCg -3' miRNA: 3'- -CGCGgC------CGGCGcGCGCCGGGgGGaGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 168371 | 0.66 | 0.449375 |
Target: 5'- cGCGCCgaGGCCGCGC-CaGUCCaucauCCaUCCa -3' miRNA: 3'- -CGCGG--CCGGCGCGcGcCGGGg----GG-AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 160909 | 0.66 | 0.449375 |
Target: 5'- -gGCCcGCCGCGaccCGC-GCCUCCCgUCCc -3' miRNA: 3'- cgCGGcCGGCGC---GCGcCGGGGGG-AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 5660 | 0.66 | 0.449375 |
Target: 5'- cGCGCUccaGcGCCGCGCGCacccgccgGGCgCUCCggucgUCCa -3' miRNA: 3'- -CGCGG---C-CGGCGCGCG--------CCGgGGGG-----AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 94216 | 0.66 | 0.441241 |
Target: 5'- aGCGUgGGCgGgCGgGCGGCgguuagCCCgUCCg -3' miRNA: 3'- -CGCGgCCGgC-GCgCGCCGg-----GGGgAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 15179 | 0.66 | 0.441241 |
Target: 5'- uCGCCGGCCGCuCcCGGCgCCCg--- -3' miRNA: 3'- cGCGGCCGGCGcGcGCCGgGGGgagg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 137303 | 0.66 | 0.425227 |
Target: 5'- cGCuGCUGGCgCGCuGCGCGaacGCCUaCUUCCa -3' miRNA: 3'- -CG-CGGCCG-GCG-CGCGC---CGGGgGGAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 81188 | 0.66 | 0.433191 |
Target: 5'- cGCGCCGGUacuCGgacCGCagGGCCCggaCCUCCu -3' miRNA: 3'- -CGCGGCCGgc-GC---GCG--CCGGGg--GGAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 113147 | 0.66 | 0.425227 |
Target: 5'- cGCGCCGaggacGCCGCGCcaccacucgccGCGaGCCgCCgCCaCCg -3' miRNA: 3'- -CGCGGC-----CGGCGCG-----------CGC-CGG-GG-GGaGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 49869 | 0.66 | 0.433191 |
Target: 5'- aGCGCCcagaacGGCCGC-CGgGGCCggagacgccgUCCCagUCCg -3' miRNA: 3'- -CGCGG------CCGGCGcGCgCCGG----------GGGG--AGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 194836 | 0.66 | 0.433191 |
Target: 5'- gGCauCCGGCC-CGCaCcacGCCCCCUUCCa -3' miRNA: 3'- -CGc-GGCCGGcGCGcGc--CGGGGGGAGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 129814 | 0.66 | 0.433191 |
Target: 5'- cGgGCCGGCaGCG-GCGGCCUgUUCUCg -3' miRNA: 3'- -CgCGGCCGgCGCgCGCCGGG-GGGAGg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 95075 | 0.66 | 0.433191 |
Target: 5'- cGCGCCuGCgGUuCGCGGCCgCUUCUgCg -3' miRNA: 3'- -CGCGGcCGgCGcGCGCCGG-GGGGAgG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 60374 | 0.66 | 0.433191 |
Target: 5'- cCGCCGucgaCGCGCGCGGgCCCgaugCCCgcacaCCg -3' miRNA: 3'- cGCGGCcg--GCGCGCGCC-GGG----GGGa----GG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 56173 | 0.66 | 0.433191 |
Target: 5'- cCGCCGGCCGUGC-CGGaCagguagCCCCa-- -3' miRNA: 3'- cGCGGCCGGCGCGcGCC-Gg-----GGGGagg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 78939 | 0.66 | 0.433191 |
Target: 5'- gGCGUCGGCUccgGCGuCGuCGGCgUCCCCg-- -3' miRNA: 3'- -CGCGGCCGG---CGC-GC-GCCG-GGGGGagg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 158097 | 0.66 | 0.441241 |
Target: 5'- gGCGCCGGCgG-GaGCGGCCgUCgUCg -3' miRNA: 3'- -CGCGGCCGgCgCgCGCCGGgGGgAGg -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 78658 | 0.66 | 0.441241 |
Target: 5'- gGCGUCgGGCC-CGgGCGGCUCCgg-CCg -3' miRNA: 3'- -CGCGG-CCGGcGCgCGCCGGGGggaGG- -5' |
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10924 | 3' | -69.2 | NC_002794.1 | + | 95330 | 0.66 | 0.441241 |
Target: 5'- uCGgCGGCaccgaggagcaGCGgGCGGCCUUCC-CCg -3' miRNA: 3'- cGCgGCCGg----------CGCgCGCCGGGGGGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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