miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10925 3' -56.4 NC_002794.1 + 162682 0.66 0.929725
Target:  5'- aUCUUCUACGGGCUgUGCGugaaauuguuuaacAGUGCgaCg -3'
miRNA:   3'- -AGGGGAUGCCUGAgAUGC--------------UCACGgaG- -5'
10925 3' -56.4 NC_002794.1 + 156304 0.66 0.928187
Target:  5'- gCCUCUGCGGcgcccuguaccccguGCUCaagUACGAGcgggucgcgGCCUCg -3'
miRNA:   3'- aGGGGAUGCC---------------UGAG---AUGCUCa--------CGGAG- -5'
10925 3' -56.4 NC_002794.1 + 142044 0.66 0.920734
Target:  5'- gCCUCgGCGGGagcCUCgGCGGGaGCCUCg -3'
miRNA:   3'- aGGGGaUGCCU---GAGaUGCUCaCGGAG- -5'
10925 3' -56.4 NC_002794.1 + 54666 0.66 0.915135
Target:  5'- aUCCCUACGGcgACUCUucCGAGcaGCCg- -3'
miRNA:   3'- aGGGGAUGCC--UGAGAu-GCUCa-CGGag -5'
10925 3' -56.4 NC_002794.1 + 87631 0.67 0.890471
Target:  5'- -gCCCUGCGGcaauccGCUCUACGugauGUGCa-- -3'
miRNA:   3'- agGGGAUGCC------UGAGAUGCu---CACGgag -5'
10925 3' -56.4 NC_002794.1 + 98988 0.68 0.854771
Target:  5'- gUCCUCgACGGACgguggcgCUACGGGgcagGCgUCg -3'
miRNA:   3'- -AGGGGaUGCCUGa------GAUGCUCa---CGgAG- -5'
10925 3' -56.4 NC_002794.1 + 88452 0.68 0.847027
Target:  5'- aUCCUCgGCGGcuauguccuggGCUCUGCG-GcGCCUCg -3'
miRNA:   3'- -AGGGGaUGCC-----------UGAGAUGCuCaCGGAG- -5'
10925 3' -56.4 NC_002794.1 + 83698 0.68 0.847027
Target:  5'- aCCCCgACGaGGCUCUGCGcG-GCCa- -3'
miRNA:   3'- aGGGGaUGC-CUGAGAUGCuCaCGGag -5'
10925 3' -56.4 NC_002794.1 + 124060 0.76 0.440432
Target:  5'- cCCCCgGCGGGCgcgGCGAGgccGCCUCg -3'
miRNA:   3'- aGGGGaUGCCUGagaUGCUCa--CGGAG- -5'
10925 3' -56.4 NC_002794.1 + 66615 0.76 0.440432
Target:  5'- gCUCCgGCGGACUCggguCGAGcGCCUCg -3'
miRNA:   3'- aGGGGaUGCCUGAGau--GCUCaCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.