miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10925 5' -62.5 NC_002794.1 + 173970 0.66 0.744171
Target:  5'- gGGGuGuccGCGGCC--UGCGUcGGUGGUGg -3'
miRNA:   3'- -CCCuC---UGCCGGcaGCGCGcCCACCAC- -5'
10925 5' -62.5 NC_002794.1 + 101641 0.66 0.744171
Target:  5'- cGGuGGCGGCgaCGggCGgGCGGGccGGUGa -3'
miRNA:   3'- cCCuCUGCCG--GCa-GCgCGCCCa-CCAC- -5'
10925 5' -62.5 NC_002794.1 + 17620 0.66 0.744171
Target:  5'- uGGGAcGACgaGGCCGUCGagggaaGCGGGcUGa-- -3'
miRNA:   3'- -CCCU-CUG--CCGGCAGCg-----CGCCC-ACcac -5'
10925 5' -62.5 NC_002794.1 + 85431 0.66 0.744171
Target:  5'- --cGGGCGGCUGUCGuCGUcGGUGGc- -3'
miRNA:   3'- cccUCUGCCGGCAGC-GCGcCCACCac -5'
10925 5' -62.5 NC_002794.1 + 45998 0.66 0.735109
Target:  5'- aGGAG-CGGCCGccCGCuCGGGgGGUc -3'
miRNA:   3'- cCCUCuGCCGGCa-GCGcGCCCaCCAc -5'
10925 5' -62.5 NC_002794.1 + 83528 0.66 0.735109
Target:  5'- gGGGAGcgcgcCGGCCGgcggCGCcggcgGCGGGgcgGGg- -3'
miRNA:   3'- -CCCUCu----GCCGGCa---GCG-----CGCCCa--CCac -5'
10925 5' -62.5 NC_002794.1 + 44085 0.66 0.733287
Target:  5'- uGGAGAcCGcGCCGcugcacgccagaCGC-CGGGUGGUGu -3'
miRNA:   3'- cCCUCU-GC-CGGCa-----------GCGcGCCCACCAC- -5'
10925 5' -62.5 NC_002794.1 + 79773 0.66 0.725969
Target:  5'- cGGcGcGGCGGUCGUCGC-CGGGgucgaGGUc -3'
miRNA:   3'- -CC-CuCUGCCGGCAGCGcGCCCa----CCAc -5'
10925 5' -62.5 NC_002794.1 + 90388 0.66 0.725969
Target:  5'- uGGGAcGACGaGCCGUCGUcucCGGucGUGGa- -3'
miRNA:   3'- -CCCU-CUGC-CGGCAGCGc--GCC--CACCac -5'
10925 5' -62.5 NC_002794.1 + 49682 0.66 0.725969
Target:  5'- aGGAGcgcuucgaGGCCGagGCGCGGGccuUGGg- -3'
miRNA:   3'- cCCUCug------CCGGCagCGCGCCC---ACCac -5'
10925 5' -62.5 NC_002794.1 + 46378 0.66 0.725969
Target:  5'- gGGGGGGCGGCaUGcUCGgGgaUGGGgaUGGUGa -3'
miRNA:   3'- -CCCUCUGCCG-GC-AGCgC--GCCC--ACCAC- -5'
10925 5' -62.5 NC_002794.1 + 58263 0.66 0.707487
Target:  5'- gGGGAGccgccgcCGGCgGUCGCGgCGGc-GGUGc -3'
miRNA:   3'- -CCCUCu------GCCGgCAGCGC-GCCcaCCAC- -5'
10925 5' -62.5 NC_002794.1 + 56402 0.66 0.706557
Target:  5'- ---cGGCaGGUCGUCGUGCGccaggacGGUGGUGu -3'
miRNA:   3'- cccuCUG-CCGGCAGCGCGC-------CCACCAC- -5'
10925 5' -62.5 NC_002794.1 + 68186 0.67 0.688784
Target:  5'- cGGGGAccucgagccCGGUCGgggCGaCGUGGGUGGg- -3'
miRNA:   3'- cCCUCU---------GCCGGCa--GC-GCGCCCACCac -5'
10925 5' -62.5 NC_002794.1 + 172995 0.67 0.687844
Target:  5'- cGGAcGuccCGGCCGUCGCGCGcuucccuGGccucccguUGGUGg -3'
miRNA:   3'- cCCU-Cu--GCCGGCAGCGCGC-------CC--------ACCAC- -5'
10925 5' -62.5 NC_002794.1 + 88547 0.67 0.685963
Target:  5'- cGGGGGC-GCCGUcCGCGCGGuucggcuucgguccGUGGg- -3'
miRNA:   3'- cCCUCUGcCGGCA-GCGCGCC--------------CACCac -5'
10925 5' -62.5 NC_002794.1 + 182740 0.67 0.678425
Target:  5'- cGGGGucgccgcGCGGCuCGcUCGCGCGGGUcGUc -3'
miRNA:   3'- cCCUC-------UGCCG-GC-AGCGCGCCCAcCAc -5'
10925 5' -62.5 NC_002794.1 + 161131 0.67 0.678425
Target:  5'- aGGcgcGGGCGGCCGcagagCGCGCGacggcgcGGUGGg- -3'
miRNA:   3'- cCC---UCUGCCGGCa----GCGCGC-------CCACCac -5'
10925 5' -62.5 NC_002794.1 + 181294 0.68 0.603404
Target:  5'- cGGGAGGCGaGCCGgcCGaccgaaGCGGGccGUGg -3'
miRNA:   3'- -CCCUCUGC-CGGCa-GCg-----CGCCCacCAC- -5'
10925 5' -62.5 NC_002794.1 + 67615 0.68 0.575049
Target:  5'- cGGAGACGGUCGUCugguCGCGGucgGGg- -3'
miRNA:   3'- cCCUCUGCCGGCAGc---GCGCCca-CCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.