miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10925 5' -62.5 NC_002794.1 + 194985 0.76 0.209257
Target:  5'- -cGAGGCGGUCGgcgugCGCGCGGGccgGGUGc -3'
miRNA:   3'- ccCUCUGCCGGCa----GCGCGCCCa--CCAC- -5'
10925 5' -62.5 NC_002794.1 + 127373 0.76 0.214107
Target:  5'- cGGAGGCGGCCGagccggcCGUGCGGGUGa-- -3'
miRNA:   3'- cCCUCUGCCGGCa------GCGCGCCCACcac -5'
10925 5' -62.5 NC_002794.1 + 94836 0.74 0.305424
Target:  5'- cGGGGGACgcgGGCCGg-GCGCGGGUcGGc- -3'
miRNA:   3'- -CCCUCUG---CCGGCagCGCGCCCA-CCac -5'
10925 5' -62.5 NC_002794.1 + 91351 0.73 0.332479
Target:  5'- gGGcGAGAacgGGCUGagGCGCGGGUGGc- -3'
miRNA:   3'- -CC-CUCUg--CCGGCagCGCGCCCACCac -5'
10925 5' -62.5 NC_002794.1 + 94287 0.73 0.339511
Target:  5'- cGGGAGugcCGGCCGcCGCGgcCGGGggggcgGGUGc -3'
miRNA:   3'- -CCCUCu--GCCGGCaGCGC--GCCCa-----CCAC- -5'
10925 5' -62.5 NC_002794.1 + 108592 0.71 0.423799
Target:  5'- uGGGGGugcaGGCCGggCGgGUGGG-GGUGg -3'
miRNA:   3'- -CCCUCug--CCGGCa-GCgCGCCCaCCAC- -5'
10925 5' -62.5 NC_002794.1 + 13545 0.71 0.448869
Target:  5'- cGGGcGGACgGGCgGUCGgGCGGGcGGg- -3'
miRNA:   3'- -CCC-UCUG-CCGgCAGCgCGCCCaCCac -5'
10925 5' -62.5 NC_002794.1 + 108718 0.7 0.501331
Target:  5'- uGGGGGugcaGGCCGggCGgGUGGG-GGUGc -3'
miRNA:   3'- -CCCUCug--CCGGCa-GCgCGCCCaCCAC- -5'
10925 5' -62.5 NC_002794.1 + 108760 0.7 0.501331
Target:  5'- uGGGGGugcaGGCCGggCGgGUGGG-GGUGc -3'
miRNA:   3'- -CCCUCug--CCGGCa-GCgCGCCCaCCAC- -5'
10925 5' -62.5 NC_002794.1 + 55751 0.7 0.501331
Target:  5'- cGGcGAucGACGGCgGUCGacgguggGCGGGUGGg- -3'
miRNA:   3'- -CC-CU--CUGCCGgCAGCg------CGCCCACCac -5'
10925 5' -62.5 NC_002794.1 + 108634 0.7 0.501331
Target:  5'- uGGGGGugcaGGCCGggCGgGUGGG-GGUGc -3'
miRNA:   3'- -CCCUCug--CCGGCa-GCgCGCCCaCCAC- -5'
10925 5' -62.5 NC_002794.1 + 108676 0.7 0.501331
Target:  5'- uGGGGGugcaGGCCGggCGgGUGGG-GGUGc -3'
miRNA:   3'- -CCCUCug--CCGGCa-GCgCGCCCaCCAC- -5'
10925 5' -62.5 NC_002794.1 + 90056 0.69 0.519418
Target:  5'- cGGAGACGGaCCGaaagCGCGacCGGGUcGGUc -3'
miRNA:   3'- cCCUCUGCC-GGCa---GCGC--GCCCA-CCAc -5'
10925 5' -62.5 NC_002794.1 + 75020 0.69 0.547009
Target:  5'- cGGGGGcuaucccugcGCGGCCGUCGUccaGCGccucGGcUGGUGu -3'
miRNA:   3'- -CCCUC----------UGCCGGCAGCG---CGC----CC-ACCAC- -5'
10925 5' -62.5 NC_002794.1 + 169211 0.69 0.547009
Target:  5'- cGGAcGGCGGCCGgcUCGUcgGCGgGGUGGa- -3'
miRNA:   3'- cCCU-CUGCCGGC--AGCG--CGC-CCACCac -5'
10925 5' -62.5 NC_002794.1 + 140563 0.69 0.556313
Target:  5'- aGGGcGGCGGCggCGUCGCGgCGGGcgcGGg- -3'
miRNA:   3'- -CCCuCUGCCG--GCAGCGC-GCCCa--CCac -5'
10925 5' -62.5 NC_002794.1 + 67615 0.68 0.575049
Target:  5'- cGGAGACGGUCGUCugguCGCGGucgGGg- -3'
miRNA:   3'- cCCUCUGCCGGCAGc---GCGCCca-CCac -5'
10925 5' -62.5 NC_002794.1 + 181294 0.68 0.603404
Target:  5'- cGGGAGGCGaGCCGgcCGaccgaaGCGGGccGUGg -3'
miRNA:   3'- -CCCUCUGC-CGGCa-GCg-----CGCCCacCAC- -5'
10925 5' -62.5 NC_002794.1 + 161131 0.67 0.678425
Target:  5'- aGGcgcGGGCGGCCGcagagCGCGCGacggcgcGGUGGg- -3'
miRNA:   3'- cCC---UCUGCCGGCa----GCGCGC-------CCACCac -5'
10925 5' -62.5 NC_002794.1 + 182740 0.67 0.678425
Target:  5'- cGGGGucgccgcGCGGCuCGcUCGCGCGGGUcGUc -3'
miRNA:   3'- cCCUC-------UGCCG-GC-AGCGCGCCCAcCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.