miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 136895 0.65 0.942581
Target:  5'- cUUCGugGAGGCCGagcgccugcgcGACGACGaGcUGGc -3'
miRNA:   3'- -AGGCugCUCCGGCau---------CUGCUGC-C-ACU- -5'
10926 3' -57 NC_002794.1 + 12900 0.65 0.942581
Target:  5'- gCCGACGGcGGCCGgcuccucguucgAGcCGACGGc-- -3'
miRNA:   3'- aGGCUGCU-CCGGCa-----------UCuGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 65936 0.66 0.938999
Target:  5'- aUUCG-CcAGGCCGUGG-CGACGGcGGc -3'
miRNA:   3'- -AGGCuGcUCCGGCAUCuGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 151509 0.66 0.938999
Target:  5'- gCCGGCGAGaCCGagAGcGCGGCGGg-- -3'
miRNA:   3'- aGGCUGCUCcGGCa-UC-UGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 132188 0.66 0.938999
Target:  5'- -aCGACGAgcgcGGCCGcggcGACGACGaUGAc -3'
miRNA:   3'- agGCUGCU----CCGGCau--CUGCUGCcACU- -5'
10926 3' -57 NC_002794.1 + 125198 0.66 0.938999
Target:  5'- cUCGugcGCGGcGGCCGcc-GCGGCGGUGAc -3'
miRNA:   3'- aGGC---UGCU-CCGGCaucUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 155167 0.66 0.938999
Target:  5'- gUCgGACGAGGuguCCGUcaAC-ACGGUGAa -3'
miRNA:   3'- -AGgCUGCUCC---GGCAucUGcUGCCACU- -5'
10926 3' -57 NC_002794.1 + 53491 0.66 0.934322
Target:  5'- -gCGGCgGAGGCggagggagCGgcggAGACGGCGGUGc -3'
miRNA:   3'- agGCUG-CUCCG--------GCa---UCUGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 88286 0.66 0.934322
Target:  5'- --gGAgGAGGCgG-AGACGGCGGaGAa -3'
miRNA:   3'- aggCUgCUCCGgCaUCUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 158057 0.66 0.934322
Target:  5'- cUCGACGAGacggucgcucccGCCGUcacGGCGACGGcGGc -3'
miRNA:   3'- aGGCUGCUC------------CGGCAu--CUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 86691 0.66 0.934322
Target:  5'- -gCGACGAgcGGCgGUAG-CGGCGGa-- -3'
miRNA:   3'- agGCUGCU--CCGgCAUCuGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 56296 0.66 0.934322
Target:  5'- aUCCGGCGGcuGCUGUuuuGuuucCGGCGGUGGa -3'
miRNA:   3'- -AGGCUGCUc-CGGCAu--Cu---GCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 162135 0.66 0.929425
Target:  5'- -aCGACGAGacgguGCUGUAcacGACGcCGGUGGc -3'
miRNA:   3'- agGCUGCUC-----CGGCAU---CUGCuGCCACU- -5'
10926 3' -57 NC_002794.1 + 59984 0.66 0.929425
Target:  5'- gCCGACGAGGUCccucGGACaGCGGa-- -3'
miRNA:   3'- aGGCUGCUCCGGca--UCUGcUGCCacu -5'
10926 3' -57 NC_002794.1 + 88251 0.66 0.929425
Target:  5'- --aGACGGGGaagaCGgGGACGgugGCGGUGAc -3'
miRNA:   3'- aggCUGCUCCg---GCaUCUGC---UGCCACU- -5'
10926 3' -57 NC_002794.1 + 52247 0.66 0.926381
Target:  5'- -aCGACGAGGugcacguguucguucUgGUAGAUGGCGGgGAa -3'
miRNA:   3'- agGCUGCUCC---------------GgCAUCUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 68079 0.66 0.924307
Target:  5'- aUCCGACGAgaaucGGCCGgcuccgAGuCGACGccGAg -3'
miRNA:   3'- -AGGCUGCU-----CCGGCa-----UCuGCUGCcaCU- -5'
10926 3' -57 NC_002794.1 + 127925 0.66 0.924307
Target:  5'- -gCGACGGGGCgauggccucgacCGaGGACGGCGGg-- -3'
miRNA:   3'- agGCUGCUCCG------------GCaUCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 69195 0.66 0.924307
Target:  5'- aCCGACG-GGCCGc-GGCGAgGGcccGAa -3'
miRNA:   3'- aGGCUGCuCCGGCauCUGCUgCCa--CU- -5'
10926 3' -57 NC_002794.1 + 107786 0.66 0.924307
Target:  5'- --gGGCGGGGCCGcgguuugaacgGGGCG-UGGUGAu -3'
miRNA:   3'- aggCUGCUCCGGCa----------UCUGCuGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.