miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 17910 0.79 0.299649
Target:  5'- cUCGGCGAGGUCgGUGGACGGUGGUGGa -3'
miRNA:   3'- aGGCUGCUCCGG-CAUCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 68560 0.77 0.411808
Target:  5'- cUCCGAccuacgcCGAGGCCGUcucGACGACGGaGAc -3'
miRNA:   3'- -AGGCU-------GCUCCGGCAu--CUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 108962 0.76 0.421062
Target:  5'- cCCGGCGGGGCCGccGACc-CGGUGAc -3'
miRNA:   3'- aGGCUGCUCCGGCauCUGcuGCCACU- -5'
10926 3' -57 NC_002794.1 + 140611 0.75 0.507654
Target:  5'- -aCGACGAGgaggacgccgaagaGCCGggGGGCGGCGGUGGc -3'
miRNA:   3'- agGCUGCUC--------------CGGCa-UCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 105399 0.74 0.548418
Target:  5'- uUUCGGCGAGGCCGcgcGCGGCGGg-- -3'
miRNA:   3'- -AGGCUGCUCCGGCaucUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 3869 0.74 0.558052
Target:  5'- cUCCGACGgccGGGaCgGUAG-CGGCGGUGGc -3'
miRNA:   3'- -AGGCUGC---UCC-GgCAUCuGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 19435 0.74 0.558052
Target:  5'- -aCGGuCGAGGuuaCCG-AGACGACGGUGAc -3'
miRNA:   3'- agGCU-GCUCC---GGCaUCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 133377 0.74 0.567733
Target:  5'- cUCGACGAGcGCgaGUGGACGGCGGg-- -3'
miRNA:   3'- aGGCUGCUC-CGg-CAUCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 100019 0.73 0.606818
Target:  5'- -gCGGCGGcGGCCGgggAGGCGGCGGgcgGGc -3'
miRNA:   3'- agGCUGCU-CCGGCa--UCUGCUGCCa--CU- -5'
10926 3' -57 NC_002794.1 + 161539 0.73 0.61665
Target:  5'- cCCGG-GAGGCCGUccgcaAGGCGACGGc-- -3'
miRNA:   3'- aGGCUgCUCCGGCA-----UCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 185542 0.72 0.675616
Target:  5'- cUCCGACGAcucGGCCGUcgucGGcgccGCGACcgGGUGAc -3'
miRNA:   3'- -AGGCUGCU---CCGGCA----UC----UGCUG--CCACU- -5'
10926 3' -57 NC_002794.1 + 181242 0.72 0.675616
Target:  5'- -gCGACGGGGCCGgAGACGGggcCGGgcacgGAg -3'
miRNA:   3'- agGCUGCUCCGGCaUCUGCU---GCCa----CU- -5'
10926 3' -57 NC_002794.1 + 129000 0.71 0.685372
Target:  5'- -gCGGCGAGGCCGc-GGCGuGCGGcUGAg -3'
miRNA:   3'- agGCUGCUCCGGCauCUGC-UGCC-ACU- -5'
10926 3' -57 NC_002794.1 + 182056 0.71 0.685372
Target:  5'- uUCgCGACGGgcccGGCCGgcGGCGACGGc-- -3'
miRNA:   3'- -AG-GCUGCU----CCGGCauCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 16175 0.71 0.685372
Target:  5'- -gCGGCGAcGGUggCGgcGGCGACGGUGGc -3'
miRNA:   3'- agGCUGCU-CCG--GCauCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 131063 0.71 0.695088
Target:  5'- uUCCGcgGCGAGcgacGCCGcGGACGGCGGcGAg -3'
miRNA:   3'- -AGGC--UGCUC----CGGCaUCUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 83756 0.71 0.695088
Target:  5'- gUCCaGGCGcGGCCG-GGACGACGGc-- -3'
miRNA:   3'- -AGG-CUGCuCCGGCaUCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 66825 0.71 0.704755
Target:  5'- cUCGGCGAacugucugcGGUCGUGGcgcGCGACGGUGu -3'
miRNA:   3'- aGGCUGCU---------CCGGCAUC---UGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 139210 0.71 0.730549
Target:  5'- aCCGACGucGCCagcgauGUgcugcuacauaucaAGACGACGGUGGg -3'
miRNA:   3'- aGGCUGCucCGG------CA--------------UCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 106454 0.7 0.75115
Target:  5'- gUCCGugGAGcGCCGgcGccaucaucugucaACGACGG-GAg -3'
miRNA:   3'- -AGGCugCUC-CGGCauC-------------UGCUGCCaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.