miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 88327 0.7 0.761279
Target:  5'- gCCGGCGcGGcGCCGgcGGCGacgaccGCGGUGGg -3'
miRNA:   3'- aGGCUGC-UC-CGGCauCUGC------UGCCACU- -5'
10926 3' -57 NC_002794.1 + 75795 0.7 0.761279
Target:  5'- gCCG-CgGAGGCCGac-GCGGCGGUGGc -3'
miRNA:   3'- aGGCuG-CUCCGGCaucUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 101827 0.7 0.770377
Target:  5'- gCCGGCG-GGCCcgagagcGGCGGCGGUGc -3'
miRNA:   3'- aGGCUGCuCCGGcau----CUGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 120488 0.7 0.770377
Target:  5'- cCCGcCGcGGCCGgcGGCGGCGGc-- -3'
miRNA:   3'- aGGCuGCuCCGGCauCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 66661 0.7 0.779361
Target:  5'- gUCGACGAccgagcGGCC---GACGGCGGUGGa -3'
miRNA:   3'- aGGCUGCU------CCGGcauCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 162991 0.7 0.788223
Target:  5'- gCCGGCGGGcGgCGgcGGCGGCGGcGGc -3'
miRNA:   3'- aGGCUGCUC-CgGCauCUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 17616 0.69 0.796954
Target:  5'- -aCGACGAGGCCGUcGAgGgaaGCGGgcUGAc -3'
miRNA:   3'- agGCUGCUCCGGCAuCUgC---UGCC--ACU- -5'
10926 3' -57 NC_002794.1 + 174402 0.69 0.796954
Target:  5'- cUCGGCGucGCCGU-GACGgcaACGGUGGc -3'
miRNA:   3'- aGGCUGCucCGGCAuCUGC---UGCCACU- -5'
10926 3' -57 NC_002794.1 + 87545 0.69 0.796954
Target:  5'- gCCGGCGguGGGUCuUGGACGGCGGcgcagGAg -3'
miRNA:   3'- aGGCUGC--UCCGGcAUCUGCUGCCa----CU- -5'
10926 3' -57 NC_002794.1 + 49121 0.69 0.802128
Target:  5'- cUCUGACGAcgGGCCGcggaucgggggagGGACGAUGGUc- -3'
miRNA:   3'- -AGGCUGCU--CCGGCa------------UCUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 65550 0.69 0.805548
Target:  5'- -aCGGCGAgauguccuGGCCG-AGACGGCGGa-- -3'
miRNA:   3'- agGCUGCU--------CCGGCaUCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 171857 0.69 0.808946
Target:  5'- gUCCGACGGGccGCCGUcaccgcggcgccucgGcGACGGCGGUc- -3'
miRNA:   3'- -AGGCUGCUC--CGGCA---------------U-CUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 53638 0.69 0.813997
Target:  5'- -gCGGCGGugcggggagcGGCgG-AGGCGGCGGUGAg -3'
miRNA:   3'- agGCUGCU----------CCGgCaUCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 151557 0.69 0.813997
Target:  5'- gCCGGCGAGGCgGggAGcgaccgcgagcGCGGCGGcGAa -3'
miRNA:   3'- aGGCUGCUCCGgCa-UC-----------UGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 53396 0.69 0.813997
Target:  5'- cCCGAUGAGcGCCGgcaccGugGACGcGUGc -3'
miRNA:   3'- aGGCUGCUC-CGGCau---CugCUGC-CACu -5'
10926 3' -57 NC_002794.1 + 94613 0.69 0.813997
Target:  5'- cUCCGGCGcgcagcgggGGGCCGcccccGGCGcCGGUGGc -3'
miRNA:   3'- -AGGCUGC---------UCCGGCau---CUGCuGCCACU- -5'
10926 3' -57 NC_002794.1 + 113290 0.69 0.822293
Target:  5'- gCCGGCGAGGCCGacgccgccgAGACGgagacccucuccGCGGccGAa -3'
miRNA:   3'- aGGCUGCUCCGGCa--------UCUGC------------UGCCa-CU- -5'
10926 3' -57 NC_002794.1 + 65509 0.69 0.822293
Target:  5'- -aCGACGAcGCCGacGACGACGGUc- -3'
miRNA:   3'- agGCUGCUcCGGCauCUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 84756 0.69 0.830428
Target:  5'- cCCGGCGGGaCCGUGGccguCGACGGc-- -3'
miRNA:   3'- aGGCUGCUCcGGCAUCu---GCUGCCacu -5'
10926 3' -57 NC_002794.1 + 181076 0.68 0.838397
Target:  5'- gCCGGCGAGGCCGgcguGACcGCGa--- -3'
miRNA:   3'- aGGCUGCUCCGGCau--CUGcUGCcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.