miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 140569 0.66 0.918968
Target:  5'- -gCGACGAGGgCGgcGGCGGCGu--- -3'
miRNA:   3'- agGCUGCUCCgGCauCUGCUGCcacu -5'
10926 3' -57 NC_002794.1 + 57112 0.66 0.918968
Target:  5'- cCCGGCccuccgGGGGCCGagucgcGGCGGuCGGUGGa -3'
miRNA:   3'- aGGCUG------CUCCGGCau----CUGCU-GCCACU- -5'
10926 3' -57 NC_002794.1 + 3680 0.66 0.918968
Target:  5'- gUCCGGCGAaggcGGCCGaagcaacGGACGACGu--- -3'
miRNA:   3'- -AGGCUGCU----CCGGCa------UCUGCUGCcacu -5'
10926 3' -57 NC_002794.1 + 55746 0.66 0.918968
Target:  5'- aUCGACGGcGGUCGacGGugGGCgGGUGGg -3'
miRNA:   3'- aGGCUGCU-CCGGCa-UCugCUG-CCACU- -5'
10926 3' -57 NC_002794.1 + 68173 0.67 0.913408
Target:  5'- cCCGGuCGGGGC----GACGugGGUGGg -3'
miRNA:   3'- aGGCU-GCUCCGgcauCUGCugCCACU- -5'
10926 3' -57 NC_002794.1 + 67633 0.67 0.913408
Target:  5'- cCCGAgCGAGcGCCGU-GACggaGACGGUc- -3'
miRNA:   3'- aGGCU-GCUC-CGGCAuCUG---CUGCCAcu -5'
10926 3' -57 NC_002794.1 + 240 0.67 0.913408
Target:  5'- gUCCGGCccaaacGGCCGgcGACGACGa--- -3'
miRNA:   3'- -AGGCUGcu----CCGGCauCUGCUGCcacu -5'
10926 3' -57 NC_002794.1 + 88860 0.67 0.913408
Target:  5'- -gCGGCGcuGGCCGac-GCGACGGUGc -3'
miRNA:   3'- agGCUGCu-CCGGCaucUGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 139540 0.67 0.913408
Target:  5'- gCUGGCGGccguGGCCGgcGACG-CGGcGAa -3'
miRNA:   3'- aGGCUGCU----CCGGCauCUGCuGCCaCU- -5'
10926 3' -57 NC_002794.1 + 50788 0.67 0.913408
Target:  5'- -gCGGCGGGGCCG--GACaGcACGGUGu -3'
miRNA:   3'- agGCUGCUCCGGCauCUG-C-UGCCACu -5'
10926 3' -57 NC_002794.1 + 189373 0.67 0.907628
Target:  5'- --aGAuCGAGGCCG-AGAUGacccucGCGGUGGg -3'
miRNA:   3'- aggCU-GCUCCGGCaUCUGC------UGCCACU- -5'
10926 3' -57 NC_002794.1 + 184883 0.67 0.907628
Target:  5'- gUCCGAugccugcucCGAGGCCGcaAGugGACcGUGu -3'
miRNA:   3'- -AGGCU---------GCUCCGGCa-UCugCUGcCACu -5'
10926 3' -57 NC_002794.1 + 142006 0.67 0.907628
Target:  5'- cUCGGCGGGGUUcucGACGACGGUc- -3'
miRNA:   3'- aGGCUGCUCCGGcauCUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 46245 0.67 0.907628
Target:  5'- cCCGACGGGGaCGUGGgACGcgcgauACGcGUGGa -3'
miRNA:   3'- aGGCUGCUCCgGCAUC-UGC------UGC-CACU- -5'
10926 3' -57 NC_002794.1 + 38199 0.67 0.904056
Target:  5'- cCCGACGcgcuggcggcuuGGGCCGcuuGGCGugcaccgacaucgugACGGUGAu -3'
miRNA:   3'- aGGCUGC------------UCCGGCau-CUGC---------------UGCCACU- -5'
10926 3' -57 NC_002794.1 + 54084 0.67 0.901631
Target:  5'- uUCCGACGAcGaGCCGUccgacGGGCG-CGGg-- -3'
miRNA:   3'- -AGGCUGCU-C-CGGCA-----UCUGCuGCCacu -5'
10926 3' -57 NC_002794.1 + 85447 0.67 0.901631
Target:  5'- aUCCGGCGAgagaagccgggcGGCUGUcGuCGuCGGUGGc -3'
miRNA:   3'- -AGGCUGCU------------CCGGCAuCuGCuGCCACU- -5'
10926 3' -57 NC_002794.1 + 157448 0.67 0.901631
Target:  5'- cCCGGCGAGcgcucGCCGacuccauGGCGGCGGgccgGAc -3'
miRNA:   3'- aGGCUGCUC-----CGGCau-----CUGCUGCCa---CU- -5'
10926 3' -57 NC_002794.1 + 174224 0.67 0.901631
Target:  5'- -aCGACGAGGaaGaAGACGaagaagcggcgGCGGUGGc -3'
miRNA:   3'- agGCUGCUCCggCaUCUGC-----------UGCCACU- -5'
10926 3' -57 NC_002794.1 + 88886 0.67 0.895418
Target:  5'- cUCGcGCGGcGGCCGgc-ACGGCGGUGGc -3'
miRNA:   3'- aGGC-UGCU-CCGGCaucUGCUGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.