miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 140654 0.67 0.895418
Target:  5'- aCCGGCGcGGCgGaGGcCGGCGGUcGAg -3'
miRNA:   3'- aGGCUGCuCCGgCaUCuGCUGCCA-CU- -5'
10926 3' -57 NC_002794.1 + 130677 0.67 0.895418
Target:  5'- aCCGGCGGGuGCCGgcGAgGuCGGa-- -3'
miRNA:   3'- aGGCUGCUC-CGGCauCUgCuGCCacu -5'
10926 3' -57 NC_002794.1 + 178737 0.67 0.895418
Target:  5'- uUCCGACGGucgaaGCCGgcGAaaCGGCGGUa- -3'
miRNA:   3'- -AGGCUGCUc----CGGCauCU--GCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 88886 0.67 0.895418
Target:  5'- cUCGcGCGGcGGCCGgc-ACGGCGGUGGc -3'
miRNA:   3'- aGGC-UGCU-CCGGCaucUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 133790 0.67 0.895418
Target:  5'- -gCGGCGAcGCCGgcggcGACGACGGcGAc -3'
miRNA:   3'- agGCUGCUcCGGCau---CUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 85403 0.67 0.893513
Target:  5'- gCCGGCGAgccGGCUcgucggcucgggggGUAGAgaGGCGGUGGc -3'
miRNA:   3'- aGGCUGCU---CCGG--------------CAUCUg-CUGCCACU- -5'
10926 3' -57 NC_002794.1 + 42344 0.67 0.888993
Target:  5'- gUCCGGCGcuauuGGUCGggagaGGugGGCGGcUGGa -3'
miRNA:   3'- -AGGCUGCu----CCGGCa----UCugCUGCC-ACU- -5'
10926 3' -57 NC_002794.1 + 107152 0.67 0.888993
Target:  5'- aCCGuCGGGGUCGauuGG-GGCGGUGAc -3'
miRNA:   3'- aGGCuGCUCCGGCau-CUgCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 52811 0.67 0.882358
Target:  5'- gCCGccagguUGAGGCCGUAGcgcccGCGGCGGc-- -3'
miRNA:   3'- aGGCu-----GCUCCGGCAUC-----UGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 106605 0.67 0.882358
Target:  5'- aCCGuCGcuGGCCGUcGAucuCGACGGUGu -3'
miRNA:   3'- aGGCuGCu-CCGGCAuCU---GCUGCCACu -5'
10926 3' -57 NC_002794.1 + 95478 0.68 0.875517
Target:  5'- gCCGACGuccgcGG-CGUGGACGACGuggcGUGGc -3'
miRNA:   3'- aGGCUGCu----CCgGCAUCUGCUGC----CACU- -5'
10926 3' -57 NC_002794.1 + 88701 0.68 0.875517
Target:  5'- cCCGGCGAgGGCCGccgcUAcGCGGCGGa-- -3'
miRNA:   3'- aGGCUGCU-CCGGC----AUcUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 54214 0.68 0.868475
Target:  5'- gCCGGCGuGGCCGcGGccgcCGGCGGgucGAg -3'
miRNA:   3'- aGGCUGCuCCGGCaUCu---GCUGCCa--CU- -5'
10926 3' -57 NC_002794.1 + 70726 0.68 0.868475
Target:  5'- uUCC-ACGAGGUcaagaaCGUgcGGAUGACGGUGc -3'
miRNA:   3'- -AGGcUGCUCCG------GCA--UCUGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 100118 0.68 0.861237
Target:  5'- gUUgGACGGGGCUGguacucgcgGGGCGGCGGc-- -3'
miRNA:   3'- -AGgCUGCUCCGGCa--------UCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 129933 0.68 0.861237
Target:  5'- gCCGGCGGcGGUggCGUcGGCGGCGGUa- -3'
miRNA:   3'- aGGCUGCU-CCG--GCAuCUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 83515 0.68 0.853808
Target:  5'- gCCGGCGGcGCCGgcGGCGggGCGGgGAg -3'
miRNA:   3'- aGGCUGCUcCGGCauCUGC--UGCCaCU- -5'
10926 3' -57 NC_002794.1 + 7611 0.68 0.853808
Target:  5'- aCCGGCGGcggcGGCgGUAG-CGGCGGg-- -3'
miRNA:   3'- aGGCUGCU----CCGgCAUCuGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 113829 0.68 0.846192
Target:  5'- cCCGACGAucgCGUGGGCGGCGGcGGc -3'
miRNA:   3'- aGGCUGCUccgGCAUCUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 173988 0.68 0.845421
Target:  5'- gUCCG-CGAGGCCGgccgcgGGguguccgcggccuGCGuCGGUGGu -3'
miRNA:   3'- -AGGCuGCUCCGGCa-----UC-------------UGCuGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.