miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 240 0.67 0.913408
Target:  5'- gUCCGGCccaaacGGCCGgcGACGACGa--- -3'
miRNA:   3'- -AGGCUGcu----CCGGCauCUGCUGCcacu -5'
10926 3' -57 NC_002794.1 + 3680 0.66 0.918968
Target:  5'- gUCCGGCGAaggcGGCCGaagcaacGGACGACGu--- -3'
miRNA:   3'- -AGGCUGCU----CCGGCa------UCUGCUGCcacu -5'
10926 3' -57 NC_002794.1 + 3869 0.74 0.558052
Target:  5'- cUCCGACGgccGGGaCgGUAG-CGGCGGUGGc -3'
miRNA:   3'- -AGGCUGC---UCC-GgCAUCuGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 7611 0.68 0.853808
Target:  5'- aCCGGCGGcggcGGCgGUAG-CGGCGGg-- -3'
miRNA:   3'- aGGCUGCU----CCGgCAUCuGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 12900 0.65 0.942581
Target:  5'- gCCGACGGcGGCCGgcuccucguucgAGcCGACGGc-- -3'
miRNA:   3'- aGGCUGCU-CCGGCa-----------UCuGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 16175 0.71 0.685372
Target:  5'- -gCGGCGAcGGUggCGgcGGCGACGGUGGc -3'
miRNA:   3'- agGCUGCU-CCG--GCauCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 17616 0.69 0.796954
Target:  5'- -aCGACGAGGCCGUcGAgGgaaGCGGgcUGAc -3'
miRNA:   3'- agGCUGCUCCGGCAuCUgC---UGCC--ACU- -5'
10926 3' -57 NC_002794.1 + 17910 0.79 0.299649
Target:  5'- cUCGGCGAGGUCgGUGGACGGUGGUGGa -3'
miRNA:   3'- aGGCUGCUCCGG-CAUCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 19435 0.74 0.558052
Target:  5'- -aCGGuCGAGGuuaCCG-AGACGACGGUGAc -3'
miRNA:   3'- agGCU-GCUCC---GGCaUCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 38199 0.67 0.904056
Target:  5'- cCCGACGcgcuggcggcuuGGGCCGcuuGGCGugcaccgacaucgugACGGUGAu -3'
miRNA:   3'- aGGCUGC------------UCCGGCau-CUGC---------------UGCCACU- -5'
10926 3' -57 NC_002794.1 + 42344 0.67 0.888993
Target:  5'- gUCCGGCGcuauuGGUCGggagaGGugGGCGGcUGGa -3'
miRNA:   3'- -AGGCUGCu----CCGGCa----UCugCUGCC-ACU- -5'
10926 3' -57 NC_002794.1 + 46245 0.67 0.907628
Target:  5'- cCCGACGGGGaCGUGGgACGcgcgauACGcGUGGa -3'
miRNA:   3'- aGGCUGCUCCgGCAUC-UGC------UGC-CACU- -5'
10926 3' -57 NC_002794.1 + 49121 0.69 0.802128
Target:  5'- cUCUGACGAcgGGCCGcggaucgggggagGGACGAUGGUc- -3'
miRNA:   3'- -AGGCUGCU--CCGGCa------------UCUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 50788 0.67 0.913408
Target:  5'- -gCGGCGGGGCCG--GACaGcACGGUGu -3'
miRNA:   3'- agGCUGCUCCGGCauCUG-C-UGCCACu -5'
10926 3' -57 NC_002794.1 + 52247 0.66 0.926381
Target:  5'- -aCGACGAGGugcacguguucguucUgGUAGAUGGCGGgGAa -3'
miRNA:   3'- agGCUGCUCC---------------GgCAUCUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 52811 0.67 0.882358
Target:  5'- gCCGccagguUGAGGCCGUAGcgcccGCGGCGGc-- -3'
miRNA:   3'- aGGCu-----GCUCCGGCAUC-----UGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 53396 0.69 0.813997
Target:  5'- cCCGAUGAGcGCCGgcaccGugGACGcGUGc -3'
miRNA:   3'- aGGCUGCUC-CGGCau---CugCUGC-CACu -5'
10926 3' -57 NC_002794.1 + 53491 0.66 0.934322
Target:  5'- -gCGGCgGAGGCggagggagCGgcggAGACGGCGGUGc -3'
miRNA:   3'- agGCUG-CUCCG--------GCa---UCUGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 53638 0.69 0.813997
Target:  5'- -gCGGCGGugcggggagcGGCgG-AGGCGGCGGUGAg -3'
miRNA:   3'- agGCUGCU----------CCGgCaUCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 54084 0.67 0.901631
Target:  5'- uUCCGACGAcGaGCCGUccgacGGGCG-CGGg-- -3'
miRNA:   3'- -AGGCUGCU-C-CGGCA-----UCUGCuGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.