miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 54214 0.68 0.868475
Target:  5'- gCCGGCGuGGCCGcGGccgcCGGCGGgucGAg -3'
miRNA:   3'- aGGCUGCuCCGGCaUCu---GCUGCCa--CU- -5'
10926 3' -57 NC_002794.1 + 55746 0.66 0.918968
Target:  5'- aUCGACGGcGGUCGacGGugGGCgGGUGGg -3'
miRNA:   3'- aGGCUGCU-CCGGCa-UCugCUG-CCACU- -5'
10926 3' -57 NC_002794.1 + 56296 0.66 0.934322
Target:  5'- aUCCGGCGGcuGCUGUuuuGuuucCGGCGGUGGa -3'
miRNA:   3'- -AGGCUGCUc-CGGCAu--Cu---GCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 57112 0.66 0.918968
Target:  5'- cCCGGCccuccgGGGGCCGagucgcGGCGGuCGGUGGa -3'
miRNA:   3'- aGGCUG------CUCCGGCau----CUGCU-GCCACU- -5'
10926 3' -57 NC_002794.1 + 59984 0.66 0.929425
Target:  5'- gCCGACGAGGUCccucGGACaGCGGa-- -3'
miRNA:   3'- aGGCUGCUCCGGca--UCUGcUGCCacu -5'
10926 3' -57 NC_002794.1 + 65509 0.69 0.822293
Target:  5'- -aCGACGAcGCCGacGACGACGGUc- -3'
miRNA:   3'- agGCUGCUcCGGCauCUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 65550 0.69 0.805548
Target:  5'- -aCGGCGAgauguccuGGCCG-AGACGGCGGa-- -3'
miRNA:   3'- agGCUGCU--------CCGGCaUCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 65936 0.66 0.938999
Target:  5'- aUUCG-CcAGGCCGUGG-CGACGGcGGc -3'
miRNA:   3'- -AGGCuGcUCCGGCAUCuGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 66661 0.7 0.779361
Target:  5'- gUCGACGAccgagcGGCC---GACGGCGGUGGa -3'
miRNA:   3'- aGGCUGCU------CCGGcauCUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 66825 0.71 0.704755
Target:  5'- cUCGGCGAacugucugcGGUCGUGGcgcGCGACGGUGu -3'
miRNA:   3'- aGGCUGCU---------CCGGCAUC---UGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 67633 0.67 0.913408
Target:  5'- cCCGAgCGAGcGCCGU-GACggaGACGGUc- -3'
miRNA:   3'- aGGCU-GCUC-CGGCAuCUG---CUGCCAcu -5'
10926 3' -57 NC_002794.1 + 68079 0.66 0.924307
Target:  5'- aUCCGACGAgaaucGGCCGgcuccgAGuCGACGccGAg -3'
miRNA:   3'- -AGGCUGCU-----CCGGCa-----UCuGCUGCcaCU- -5'
10926 3' -57 NC_002794.1 + 68173 0.67 0.913408
Target:  5'- cCCGGuCGGGGC----GACGugGGUGGg -3'
miRNA:   3'- aGGCU-GCUCCGgcauCUGCugCCACU- -5'
10926 3' -57 NC_002794.1 + 68560 0.77 0.411808
Target:  5'- cUCCGAccuacgcCGAGGCCGUcucGACGACGGaGAc -3'
miRNA:   3'- -AGGCU-------GCUCCGGCAu--CUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 69195 0.66 0.924307
Target:  5'- aCCGACG-GGCCGc-GGCGAgGGcccGAa -3'
miRNA:   3'- aGGCUGCuCCGGCauCUGCUgCCa--CU- -5'
10926 3' -57 NC_002794.1 + 70117 0.67 0.895418
Target:  5'- --aGGCG-GGCCGcgGGACGGCGGc-- -3'
miRNA:   3'- aggCUGCuCCGGCa-UCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 70726 0.68 0.868475
Target:  5'- uUCC-ACGAGGUcaagaaCGUgcGGAUGACGGUGc -3'
miRNA:   3'- -AGGcUGCUCCG------GCA--UCUGCUGCCACu -5'
10926 3' -57 NC_002794.1 + 75795 0.7 0.761279
Target:  5'- gCCG-CgGAGGCCGac-GCGGCGGUGGc -3'
miRNA:   3'- aGGCuG-CUCCGGCaucUGCUGCCACU- -5'
10926 3' -57 NC_002794.1 + 83515 0.68 0.853808
Target:  5'- gCCGGCGGcGCCGgcGGCGggGCGGgGAg -3'
miRNA:   3'- aGGCUGCUcCGGCauCUGC--UGCCaCU- -5'
10926 3' -57 NC_002794.1 + 83756 0.71 0.695088
Target:  5'- gUCCaGGCGcGGCCG-GGACGACGGc-- -3'
miRNA:   3'- -AGG-CUGCuCCGGCaUCUGCUGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.