miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 3' -57 NC_002794.1 + 189373 0.67 0.907628
Target:  5'- --aGAuCGAGGCCG-AGAUGacccucGCGGUGGg -3'
miRNA:   3'- aggCU-GCUCCGGCaUCUGC------UGCCACU- -5'
10926 3' -57 NC_002794.1 + 185542 0.72 0.675616
Target:  5'- cUCCGACGAcucGGCCGUcgucGGcgccGCGACcgGGUGAc -3'
miRNA:   3'- -AGGCUGCU---CCGGCA----UC----UGCUG--CCACU- -5'
10926 3' -57 NC_002794.1 + 184883 0.67 0.907628
Target:  5'- gUCCGAugccugcucCGAGGCCGcaAGugGACcGUGu -3'
miRNA:   3'- -AGGCU---------GCUCCGGCa-UCugCUGcCACu -5'
10926 3' -57 NC_002794.1 + 182056 0.71 0.685372
Target:  5'- uUCgCGACGGgcccGGCCGgcGGCGACGGc-- -3'
miRNA:   3'- -AG-GCUGCU----CCGGCauCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 181242 0.72 0.675616
Target:  5'- -gCGACGGGGCCGgAGACGGggcCGGgcacgGAg -3'
miRNA:   3'- agGCUGCUCCGGCaUCUGCU---GCCa----CU- -5'
10926 3' -57 NC_002794.1 + 181076 0.68 0.838397
Target:  5'- gCCGGCGAGGCCGgcguGACcGCGa--- -3'
miRNA:   3'- aGGCUGCUCCGGCau--CUGcUGCcacu -5'
10926 3' -57 NC_002794.1 + 178737 0.67 0.895418
Target:  5'- uUCCGACGGucgaaGCCGgcGAaaCGGCGGUa- -3'
miRNA:   3'- -AGGCUGCUc----CGGCauCU--GCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 174402 0.69 0.796954
Target:  5'- cUCGGCGucGCCGU-GACGgcaACGGUGGc -3'
miRNA:   3'- aGGCUGCucCGGCAuCUGC---UGCCACU- -5'
10926 3' -57 NC_002794.1 + 174224 0.67 0.901631
Target:  5'- -aCGACGAGGaaGaAGACGaagaagcggcgGCGGUGGc -3'
miRNA:   3'- agGCUGCUCCggCaUCUGC-----------UGCCACU- -5'
10926 3' -57 NC_002794.1 + 173988 0.68 0.845421
Target:  5'- gUCCG-CGAGGCCGgccgcgGGguguccgcggccuGCGuCGGUGGu -3'
miRNA:   3'- -AGGCuGCUCCGGCa-----UC-------------UGCuGCCACU- -5'
10926 3' -57 NC_002794.1 + 171857 0.69 0.808946
Target:  5'- gUCCGACGGGccGCCGUcaccgcggcgccucgGcGACGGCGGUc- -3'
miRNA:   3'- -AGGCUGCUC--CGGCA---------------U-CUGCUGCCAcu -5'
10926 3' -57 NC_002794.1 + 162991 0.7 0.788223
Target:  5'- gCCGGCGGGcGgCGgcGGCGGCGGcGGc -3'
miRNA:   3'- aGGCUGCUC-CgGCauCUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 162135 0.66 0.929425
Target:  5'- -aCGACGAGacgguGCUGUAcacGACGcCGGUGGc -3'
miRNA:   3'- agGCUGCUC-----CGGCAU---CUGCuGCCACU- -5'
10926 3' -57 NC_002794.1 + 161539 0.73 0.61665
Target:  5'- cCCGG-GAGGCCGUccgcaAGGCGACGGc-- -3'
miRNA:   3'- aGGCUgCUCCGGCA-----UCUGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 158057 0.66 0.934322
Target:  5'- cUCGACGAGacggucgcucccGCCGUcacGGCGACGGcGGc -3'
miRNA:   3'- aGGCUGCUC------------CGGCAu--CUGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 157448 0.67 0.901631
Target:  5'- cCCGGCGAGcgcucGCCGacuccauGGCGGCGGgccgGAc -3'
miRNA:   3'- aGGCUGCUC-----CGGCau-----CUGCUGCCa---CU- -5'
10926 3' -57 NC_002794.1 + 155167 0.66 0.938999
Target:  5'- gUCgGACGAGGuguCCGUcaAC-ACGGUGAa -3'
miRNA:   3'- -AGgCUGCUCC---GGCAucUGcUGCCACU- -5'
10926 3' -57 NC_002794.1 + 151557 0.69 0.813997
Target:  5'- gCCGGCGAGGCgGggAGcgaccgcgagcGCGGCGGcGAa -3'
miRNA:   3'- aGGCUGCUCCGgCa-UC-----------UGCUGCCaCU- -5'
10926 3' -57 NC_002794.1 + 151509 0.66 0.938999
Target:  5'- gCCGGCGAGaCCGagAGcGCGGCGGg-- -3'
miRNA:   3'- aGGCUGCUCcGGCa-UC-UGCUGCCacu -5'
10926 3' -57 NC_002794.1 + 142006 0.67 0.907628
Target:  5'- cUCGGCGGGGUUcucGACGACGGUc- -3'
miRNA:   3'- aGGCUGCUCCGGcauCUGCUGCCAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.