Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10926 | 3' | -57 | NC_002794.1 | + | 17910 | 0.79 | 0.299649 |
Target: 5'- cUCGGCGAGGUCgGUGGACGGUGGUGGa -3' miRNA: 3'- aGGCUGCUCCGG-CAUCUGCUGCCACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 162135 | 0.66 | 0.929425 |
Target: 5'- -aCGACGAGacgguGCUGUAcacGACGcCGGUGGc -3' miRNA: 3'- agGCUGCUC-----CGGCAU---CUGCuGCCACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 59984 | 0.66 | 0.929425 |
Target: 5'- gCCGACGAGGUCccucGGACaGCGGa-- -3' miRNA: 3'- aGGCUGCUCCGGca--UCUGcUGCCacu -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 88251 | 0.66 | 0.929425 |
Target: 5'- --aGACGGGGaagaCGgGGACGgugGCGGUGAc -3' miRNA: 3'- aggCUGCUCCg---GCaUCUGC---UGCCACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 52247 | 0.66 | 0.926381 |
Target: 5'- -aCGACGAGGugcacguguucguucUgGUAGAUGGCGGgGAa -3' miRNA: 3'- agGCUGCUCC---------------GgCAUCUGCUGCCaCU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 68079 | 0.66 | 0.924307 |
Target: 5'- aUCCGACGAgaaucGGCCGgcuccgAGuCGACGccGAg -3' miRNA: 3'- -AGGCUGCU-----CCGGCa-----UCuGCUGCcaCU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 127925 | 0.66 | 0.924307 |
Target: 5'- -gCGACGGGGCgauggccucgacCGaGGACGGCGGg-- -3' miRNA: 3'- agGCUGCUCCG------------GCaUCUGCUGCCacu -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 69195 | 0.66 | 0.924307 |
Target: 5'- aCCGACG-GGCCGc-GGCGAgGGcccGAa -3' miRNA: 3'- aGGCUGCuCCGGCauCUGCUgCCa--CU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 107786 | 0.66 | 0.924307 |
Target: 5'- --gGGCGGGGCCGcgguuugaacgGGGCG-UGGUGAu -3' miRNA: 3'- aggCUGCUCCGGCa----------UCUGCuGCCACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 53491 | 0.66 | 0.934322 |
Target: 5'- -gCGGCgGAGGCggagggagCGgcggAGACGGCGGUGc -3' miRNA: 3'- agGCUG-CUCCG--------GCa---UCUGCUGCCACu -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 88286 | 0.66 | 0.934322 |
Target: 5'- --gGAgGAGGCgG-AGACGGCGGaGAa -3' miRNA: 3'- aggCUgCUCCGgCaUCUGCUGCCaCU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 158057 | 0.66 | 0.934322 |
Target: 5'- cUCGACGAGacggucgcucccGCCGUcacGGCGACGGcGGc -3' miRNA: 3'- aGGCUGCUC------------CGGCAu--CUGCUGCCaCU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 12900 | 0.65 | 0.942581 |
Target: 5'- gCCGACGGcGGCCGgcuccucguucgAGcCGACGGc-- -3' miRNA: 3'- aGGCUGCU-CCGGCa-----------UCuGCUGCCacu -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 65936 | 0.66 | 0.938999 |
Target: 5'- aUUCG-CcAGGCCGUGG-CGACGGcGGc -3' miRNA: 3'- -AGGCuGcUCCGGCAUCuGCUGCCaCU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 151509 | 0.66 | 0.938999 |
Target: 5'- gCCGGCGAGaCCGagAGcGCGGCGGg-- -3' miRNA: 3'- aGGCUGCUCcGGCa-UC-UGCUGCCacu -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 132188 | 0.66 | 0.938999 |
Target: 5'- -aCGACGAgcgcGGCCGcggcGACGACGaUGAc -3' miRNA: 3'- agGCUGCU----CCGGCau--CUGCUGCcACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 125198 | 0.66 | 0.938999 |
Target: 5'- cUCGugcGCGGcGGCCGcc-GCGGCGGUGAc -3' miRNA: 3'- aGGC---UGCU-CCGGCaucUGCUGCCACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 155167 | 0.66 | 0.938999 |
Target: 5'- gUCgGACGAGGuguCCGUcaAC-ACGGUGAa -3' miRNA: 3'- -AGgCUGCUCC---GGCAucUGcUGCCACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 56296 | 0.66 | 0.934322 |
Target: 5'- aUCCGGCGGcuGCUGUuuuGuuucCGGCGGUGGa -3' miRNA: 3'- -AGGCUGCUc-CGGCAu--Cu---GCUGCCACU- -5' |
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10926 | 3' | -57 | NC_002794.1 | + | 86691 | 0.66 | 0.934322 |
Target: 5'- -gCGACGAgcGGCgGUAG-CGGCGGa-- -3' miRNA: 3'- agGCUGCU--CCGgCAUCuGCUGCCacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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