miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 5' -60.2 NC_002794.1 + 96454 0.66 0.83499
Target:  5'- uCCg-CCCGCCCgccgucgcagcAGGGUCCGGGuuUGUUg -3'
miRNA:   3'- -GGagGGGCGGG-----------UCUCAGGCUCu-GCAG- -5'
10926 5' -60.2 NC_002794.1 + 105648 0.66 0.827093
Target:  5'- gCCUCCgcccgCCGCgCCGGAGccCCGccuGugGUCc -3'
miRNA:   3'- -GGAGG-----GGCG-GGUCUCa-GGCu--CugCAG- -5'
10926 5' -60.2 NC_002794.1 + 179534 0.66 0.819037
Target:  5'- uCC-CCCUGCCCcuGGccggcaCCGAcGACGUCg -3'
miRNA:   3'- -GGaGGGGCGGGucUCa-----GGCU-CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 98302 0.66 0.819037
Target:  5'- aCUaCUUCGCCCuGAGcUCCGgguuGGugGUCg -3'
miRNA:   3'- gGA-GGGGCGGGuCUC-AGGC----UCugCAG- -5'
10926 5' -60.2 NC_002794.1 + 157309 0.66 0.819037
Target:  5'- gCCUCCCCG-CCAGAaGcCCGccGGCGcCu -3'
miRNA:   3'- -GGAGGGGCgGGUCU-CaGGCu-CUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 113306 0.66 0.810829
Target:  5'- cCCUCCCgccgGCCCAgccggcGAGgccgacgccgCCGAGACGg- -3'
miRNA:   3'- -GGAGGGg---CGGGU------CUCa---------GGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 151416 0.66 0.810829
Target:  5'- aCCggcgCgCCCGCCCGGAcGUCgGcGGCGg- -3'
miRNA:   3'- -GGa---G-GGGCGGGUCU-CAGgCuCUGCag -5'
10926 5' -60.2 NC_002794.1 + 37331 0.66 0.810829
Target:  5'- aCagCCCGCagCAGAGgacgcggCCGAGAuCGUCu -3'
miRNA:   3'- gGagGGGCGg-GUCUCa------GGCUCU-GCAG- -5'
10926 5' -60.2 NC_002794.1 + 181139 0.66 0.802477
Target:  5'- gCUCgcggcuUCgGCUCGGGGUCCGGcGCGUCa -3'
miRNA:   3'- gGAG------GGgCGGGUCUCAGGCUcUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 152461 0.66 0.802477
Target:  5'- gCUCCagcaCC-CCCGGgcaGGUCCGGGACGg- -3'
miRNA:   3'- gGAGG----GGcGGGUC---UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 193620 0.66 0.802477
Target:  5'- -gUCCgCGCCaaaacgaGGaAGUCCGAGGCGa- -3'
miRNA:   3'- ggAGGgGCGGg------UC-UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 176497 0.66 0.802477
Target:  5'- cCCgCCCCGCCCGGA--UCG-GGCGg- -3'
miRNA:   3'- -GGaGGGGCGGGUCUcaGGCuCUGCag -5'
10926 5' -60.2 NC_002794.1 + 4219 0.66 0.793987
Target:  5'- gCCUCgCCGUCCAGcAGcCCGccgggGGACGg- -3'
miRNA:   3'- -GGAGgGGCGGGUC-UCaGGC-----UCUGCag -5'
10926 5' -60.2 NC_002794.1 + 16771 0.66 0.793987
Target:  5'- --aCCCCGCCCgaGGAaccGUCCG-GuCGUCc -3'
miRNA:   3'- ggaGGGGCGGG--UCU---CAGGCuCuGCAG- -5'
10926 5' -60.2 NC_002794.1 + 184925 0.67 0.785367
Target:  5'- gCUCUauuuaCCGaccaggaaCCCGGAGgggccggCCGAGACGUCc -3'
miRNA:   3'- gGAGG-----GGC--------GGGUCUCa------GGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 131466 0.67 0.785367
Target:  5'- uCCgCCCCGgCCAGAGggccaCCGu--CGUCa -3'
miRNA:   3'- -GGaGGGGCgGGUCUCa----GGCucuGCAG- -5'
10926 5' -60.2 NC_002794.1 + 161548 0.67 0.785367
Target:  5'- aCUCCUCGaCCCGGGaggccGUCCGcaAGGCGa- -3'
miRNA:   3'- gGAGGGGC-GGGUCU-----CAGGC--UCUGCag -5'
10926 5' -60.2 NC_002794.1 + 48656 0.67 0.776623
Target:  5'- cUCUUgCCGUcgggCCGGGG-CCGGGGCGUUg -3'
miRNA:   3'- -GGAGgGGCG----GGUCUCaGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 173500 0.67 0.767764
Target:  5'- cCCUCuCCCGCUCAccccGGUCCcGAuccggucgGGCGUCg -3'
miRNA:   3'- -GGAG-GGGCGGGUc---UCAGG-CU--------CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 176577 0.67 0.767764
Target:  5'- gUCUCCUgGCCUGGAGcCuCGucGCGUCg -3'
miRNA:   3'- -GGAGGGgCGGGUCUCaG-GCucUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.