Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10926 | 5' | -60.2 | NC_002794.1 | + | 176577 | 0.67 | 0.767764 |
Target: 5'- gUCUCCUgGCCUGGAGcCuCGucGCGUCg -3' miRNA: 3'- -GGAGGGgCGGGUCUCaG-GCucUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 48656 | 0.67 | 0.776623 |
Target: 5'- cUCUUgCCGUcgggCCGGGG-CCGGGGCGUUg -3' miRNA: 3'- -GGAGgGGCG----GGUCUCaGGCUCUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 161548 | 0.67 | 0.785367 |
Target: 5'- aCUCCUCGaCCCGGGaggccGUCCGcaAGGCGa- -3' miRNA: 3'- gGAGGGGC-GGGUCU-----CAGGC--UCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 131466 | 0.67 | 0.785367 |
Target: 5'- uCCgCCCCGgCCAGAGggccaCCGu--CGUCa -3' miRNA: 3'- -GGaGGGGCgGGUCUCa----GGCucuGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 184925 | 0.67 | 0.785367 |
Target: 5'- gCUCUauuuaCCGaccaggaaCCCGGAGgggccggCCGAGACGUCc -3' miRNA: 3'- gGAGG-----GGC--------GGGUCUCa------GGCUCUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 194142 | 0.67 | 0.767764 |
Target: 5'- gUUCCUCGCCaaaaaagaGGaAGUCCGAGGCa-- -3' miRNA: 3'- gGAGGGGCGGg-------UC-UCAGGCUCUGcag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 173500 | 0.67 | 0.767764 |
Target: 5'- cCCUCuCCCGCUCAccccGGUCCcGAuccggucgGGCGUCg -3' miRNA: 3'- -GGAG-GGGCGGGUc---UCAGG-CU--------CUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 152756 | 0.68 | 0.693665 |
Target: 5'- uCCUCCCCGCgCuc-GUCCagGAGGCGg- -3' miRNA: 3'- -GGAGGGGCGgGucuCAGG--CUCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 133665 | 0.68 | 0.693665 |
Target: 5'- -aUCCCCGUCCGGcucGaCCGGGACGcCc -3' miRNA: 3'- ggAGGGGCGGGUCu--CaGGCUCUGCaG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 124002 | 0.68 | 0.693665 |
Target: 5'- aCCUCaccgCCGgCCAGAcUCCGcucGACGUCg -3' miRNA: 3'- -GGAGg---GGCgGGUCUcAGGCu--CUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 2199 | 0.68 | 0.693665 |
Target: 5'- uCCggcgcgCCCCGaccCCCAcGAGUCCGAGucccaGUCc -3' miRNA: 3'- -GGa-----GGGGC---GGGU-CUCAGGCUCug---CAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 119526 | 0.68 | 0.702221 |
Target: 5'- uCCUCCCUcccggcgGCCgGGAGUCgcaaCGAcucGACGUCc -3' miRNA: 3'- -GGAGGGG-------CGGgUCUCAG----GCU---CUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 43917 | 0.68 | 0.711677 |
Target: 5'- gCUCCgCCGCCCGcgacgacggccccGGGUgcuccucggcCCGGGACGUg -3' miRNA: 3'- gGAGG-GGCGGGU-------------CUCA----------GGCUCUGCAg -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 74837 | 0.68 | 0.712619 |
Target: 5'- gCCUCCCaagaGgCCGGAGagCGGcGCGUCg -3' miRNA: 3'- -GGAGGGg---CgGGUCUCagGCUcUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 176956 | 0.68 | 0.719199 |
Target: 5'- cCCUCCCCgacggcGCCCGGAcuggcgcuggaucgGUUCGuGACGg- -3' miRNA: 3'- -GGAGGGG------CGGGUCU--------------CAGGCuCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 130580 | 0.68 | 0.722008 |
Target: 5'- gCCUCCUCGCCCcccucGGcGUCguccuCGAGACGa- -3' miRNA: 3'- -GGAGGGGCGGG-----UCuCAG-----GCUCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 120005 | 0.68 | 0.712619 |
Target: 5'- aCCUCCCgCGCUggaCGGuccgcGUCCGcuuGACGUCc -3' miRNA: 3'- -GGAGGG-GCGG---GUCu----CAGGCu--CUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 102296 | 0.68 | 0.722008 |
Target: 5'- aCUCgaCGUCCGGGGguagCCGGGAgGUCu -3' miRNA: 3'- gGAGggGCGGGUCUCa---GGCUCUgCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 82641 | 0.68 | 0.731328 |
Target: 5'- gCCUCCuCCGCCCGGGcgaccgccGUCCaGGAUcUCc -3' miRNA: 3'- -GGAGG-GGCGGGUCU--------CAGGcUCUGcAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 80003 | 0.68 | 0.693665 |
Target: 5'- gCCUgggaCgCGCgaGGGGUCCGGGGCGUCc -3' miRNA: 3'- -GGAg---GgGCGggUCUCAGGCUCUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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