miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 5' -60.2 NC_002794.1 + 149745 0.76 0.293546
Target:  5'- uUCUCCCCGCCCGcgucggcucccccGUCCGAGucgGCGUCg -3'
miRNA:   3'- -GGAGGGGCGGGUcu-----------CAGGCUC---UGCAG- -5'
10926 5' -60.2 NC_002794.1 + 151822 0.73 0.441081
Target:  5'- gCUCUCCGCCCccGGGGUCCGcGGCa-- -3'
miRNA:   3'- gGAGGGGCGGG--UCUCAGGCuCUGcag -5'
10926 5' -60.2 NC_002794.1 + 174164 0.72 0.458362
Target:  5'- gCUCCCCGCCuCGGcGUCCacGGGcgcuGCGUCg -3'
miRNA:   3'- gGAGGGGCGG-GUCuCAGG--CUC----UGCAG- -5'
10926 5' -60.2 NC_002794.1 + 90194 0.72 0.475998
Target:  5'- gCgcgCUCCGCCCGGAccgCCGGGaACGUCg -3'
miRNA:   3'- gGa--GGGGCGGGUCUca-GGCUC-UGCAG- -5'
10926 5' -60.2 NC_002794.1 + 194531 0.72 0.503065
Target:  5'- cCCUCCCUcCCCGG-GUCCGAagaGACGcCu -3'
miRNA:   3'- -GGAGGGGcGGGUCuCAGGCU---CUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 145062 0.71 0.509477
Target:  5'- gCCUCCUCGCCCGGcgucgGGcgcUCCGgcgcccccgcccucGGGCGUCg -3'
miRNA:   3'- -GGAGGGGCGGGUC-----UC---AGGC--------------UCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 193808 0.71 0.521475
Target:  5'- gUUCCUCGCCaaaacagaGGaAGUCCGAGACGa- -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 116300 0.71 0.530779
Target:  5'- aCCUCCCCGUCCuGGuUCCucGGCGUg -3'
miRNA:   3'- -GGAGGGGCGGGuCUcAGGcuCUGCAg -5'
10926 5' -60.2 NC_002794.1 + 141974 0.71 0.530779
Target:  5'- aCUCCUCGUCgGGAcUCCGGcGGCGUCc -3'
miRNA:   3'- gGAGGGGCGGgUCUcAGGCU-CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 86393 0.71 0.530779
Target:  5'- uCCUCUuuGUCUccucGGAgcGUCCGAGACGUUu -3'
miRNA:   3'- -GGAGGggCGGG----UCU--CAGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 4638 0.71 0.540143
Target:  5'- gCUCuCUCGCCCgAGAGgCCGAGACcGUUc -3'
miRNA:   3'- gGAG-GGGCGGG-UCUCaGGCUCUG-CAG- -5'
10926 5' -60.2 NC_002794.1 + 65886 0.7 0.578098
Target:  5'- cCCU-CCgGUCCuGGGUCUaGAGACGUCg -3'
miRNA:   3'- -GGAgGGgCGGGuCUCAGG-CUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 43652 0.7 0.578098
Target:  5'- --gUUCCGCCCGGAGgcgUCG-GACGUCg -3'
miRNA:   3'- ggaGGGGCGGGUCUCa--GGCuCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 11559 0.7 0.578098
Target:  5'- gCCUCCCCGuCCCAGAGcacggcUCCGcucacggccggGGACa-- -3'
miRNA:   3'- -GGAGGGGC-GGGUCUC------AGGC-----------UCUGcag -5'
10926 5' -60.2 NC_002794.1 + 149922 0.7 0.587686
Target:  5'- gCUUCCCCGCCCGGuGaCCGucucucGGGCG-Cg -3'
miRNA:   3'- -GGAGGGGCGGGUCuCaGGC------UCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 164879 0.7 0.587686
Target:  5'- uCCUCCCCGgCgacggCGGGGUCUucgccGGACGUCg -3'
miRNA:   3'- -GGAGGGGCgG-----GUCUCAGGc----UCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 143821 0.7 0.597303
Target:  5'- uCCUCaaggaCCUGCUCgAGAGcUCCGAGACGg- -3'
miRNA:   3'- -GGAG-----GGGCGGG-UCUC-AGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 194793 0.7 0.606943
Target:  5'- gCC-CCCC-CCCGGGGguucguUUCGGGGCGUCc -3'
miRNA:   3'- -GGaGGGGcGGGUCUC------AGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 193933 0.7 0.6166
Target:  5'- gUUCCUCGCCaaaaaagaAGaAGUCCGAGGCGcCc -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 194268 0.7 0.6166
Target:  5'- gUUCCUCGCCaaaaaagaGGaAGUCCGAGGCGcCc -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.