Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10926 | 5' | -60.2 | NC_002794.1 | + | 193933 | 0.7 | 0.6166 |
Target: 5'- gUUCCUCGCCaaaaaagaAGaAGUCCGAGGCGcCc -3' miRNA: 3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCaG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 192898 | 0.69 | 0.626267 |
Target: 5'- cCC-CCCCGCCCcguGAGUCaaaGcGAgGUCa -3' miRNA: 3'- -GGaGGGGCGGGu--CUCAGg--CuCUgCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 115052 | 0.69 | 0.635938 |
Target: 5'- uCCUCCaCGCCCGGcGUgagcucuuccCCGAGGCGg- -3' miRNA: 3'- -GGAGGgGCGGGUCuCA----------GGCUCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 146852 | 0.69 | 0.664909 |
Target: 5'- cUCUCCCgCGCCgCGGcGG-CCGcGGCGUCg -3' miRNA: 3'- -GGAGGG-GCGG-GUC-UCaGGCuCUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 80003 | 0.68 | 0.693665 |
Target: 5'- gCCUgggaCgCGCgaGGGGUCCGGGGCGUCc -3' miRNA: 3'- -GGAg---GgGCGggUCUCAGGCUCUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 2199 | 0.68 | 0.693665 |
Target: 5'- uCCggcgcgCCCCGaccCCCAcGAGUCCGAGucccaGUCc -3' miRNA: 3'- -GGa-----GGGGC---GGGU-CUCAGGCUCug---CAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 124002 | 0.68 | 0.693665 |
Target: 5'- aCCUCaccgCCGgCCAGAcUCCGcucGACGUCg -3' miRNA: 3'- -GGAGg---GGCgGGUCUcAGGCu--CUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 133665 | 0.68 | 0.693665 |
Target: 5'- -aUCCCCGUCCGGcucGaCCGGGACGcCc -3' miRNA: 3'- ggAGGGGCGGGUCu--CaGGCUCUGCaG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 152756 | 0.68 | 0.693665 |
Target: 5'- uCCUCCCCGCgCuc-GUCCagGAGGCGg- -3' miRNA: 3'- -GGAGGGGCGgGucuCAGG--CUCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 119526 | 0.68 | 0.702221 |
Target: 5'- uCCUCCCUcccggcgGCCgGGAGUCgcaaCGAcucGACGUCc -3' miRNA: 3'- -GGAGGGG-------CGGgUCUCAG----GCU---CUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 43917 | 0.68 | 0.711677 |
Target: 5'- gCUCCgCCGCCCGcgacgacggccccGGGUgcuccucggcCCGGGACGUg -3' miRNA: 3'- gGAGG-GGCGGGU-------------CUCA----------GGCUCUGCAg -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 74837 | 0.68 | 0.712619 |
Target: 5'- gCCUCCCaagaGgCCGGAGagCGGcGCGUCg -3' miRNA: 3'- -GGAGGGg---CgGGUCUCagGCUcUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 120005 | 0.68 | 0.712619 |
Target: 5'- aCCUCCCgCGCUggaCGGuccgcGUCCGcuuGACGUCc -3' miRNA: 3'- -GGAGGG-GCGG---GUCu----CAGGCu--CUGCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 176956 | 0.68 | 0.719199 |
Target: 5'- cCCUCCCCgacggcGCCCGGAcuggcgcuggaucgGUUCGuGACGg- -3' miRNA: 3'- -GGAGGGG------CGGGUCU--------------CAGGCuCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 130580 | 0.68 | 0.722008 |
Target: 5'- gCCUCCUCGCCCcccucGGcGUCguccuCGAGACGa- -3' miRNA: 3'- -GGAGGGGCGGG-----UCuCAG-----GCUCUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 102296 | 0.68 | 0.722008 |
Target: 5'- aCUCgaCGUCCGGGGguagCCGGGAgGUCu -3' miRNA: 3'- gGAGggGCGGGUCUCa---GGCUCUgCAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 82641 | 0.68 | 0.731328 |
Target: 5'- gCCUCCuCCGCCCGGGcgaccgccGUCCaGGAUcUCc -3' miRNA: 3'- -GGAGG-GGCGGGUCU--------CAGGcUCUGcAG- -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 16439 | 0.68 | 0.731328 |
Target: 5'- cCCUCCCgGgCCCcGGGcgCgGAGGCGUg -3' miRNA: 3'- -GGAGGGgC-GGGuCUCa-GgCUCUGCAg -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 128596 | 0.67 | 0.749731 |
Target: 5'- uCCUCCCgCuCCCcGGGUCCGAaGCGa- -3' miRNA: 3'- -GGAGGG-GcGGGuCUCAGGCUcUGCag -5' |
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10926 | 5' | -60.2 | NC_002794.1 | + | 193734 | 0.67 | 0.749731 |
Target: 5'- -gUCCgCGCCaaaaugaGGaAGUCCGAGACGa- -3' miRNA: 3'- ggAGGgGCGGg------UC-UCAGGCUCUGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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