miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 5' -60.2 NC_002794.1 + 194142 0.67 0.767764
Target:  5'- gUUCCUCGCCaaaaaagaGGaAGUCCGAGGCa-- -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGcag -5'
10926 5' -60.2 NC_002794.1 + 171814 0.67 0.758798
Target:  5'- cCCUCCCCGuccgcccgcCCCGGAccacacccgugcGcCCGGGcggGCGUCg -3'
miRNA:   3'- -GGAGGGGC---------GGGUCU------------CaGGCUC---UGCAG- -5'
10926 5' -60.2 NC_002794.1 + 183663 0.67 0.758798
Target:  5'- gCCgggCgCCGCUCGGAcGUgCCGGcGGCGUCg -3'
miRNA:   3'- -GGa--GgGGCGGGUCU-CA-GGCU-CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 181702 0.67 0.758798
Target:  5'- gUCgagCCCCGCCgccuGAaccugcgccUCCGAGACGUCa -3'
miRNA:   3'- -GGa--GGGGCGGgu--CUc--------AGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 182095 0.67 0.758798
Target:  5'- aCUCgCCGcCCCGGAGccacCCGGGugGcUCc -3'
miRNA:   3'- gGAGgGGC-GGGUCUCa---GGCUCugC-AG- -5'
10926 5' -60.2 NC_002794.1 + 193734 0.67 0.749731
Target:  5'- -gUCCgCGCCaaaaugaGGaAGUCCGAGACGa- -3'
miRNA:   3'- ggAGGgGCGGg------UC-UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 128596 0.67 0.749731
Target:  5'- uCCUCCCgCuCCCcGGGUCCGAaGCGa- -3'
miRNA:   3'- -GGAGGG-GcGGGuCUCAGGCUcUGCag -5'
10926 5' -60.2 NC_002794.1 + 82641 0.68 0.731328
Target:  5'- gCCUCCuCCGCCCGGGcgaccgccGUCCaGGAUcUCc -3'
miRNA:   3'- -GGAGG-GGCGGGUCU--------CAGGcUCUGcAG- -5'
10926 5' -60.2 NC_002794.1 + 16439 0.68 0.731328
Target:  5'- cCCUCCCgGgCCCcGGGcgCgGAGGCGUg -3'
miRNA:   3'- -GGAGGGgC-GGGuCUCa-GgCUCUGCAg -5'
10926 5' -60.2 NC_002794.1 + 102296 0.68 0.722008
Target:  5'- aCUCgaCGUCCGGGGguagCCGGGAgGUCu -3'
miRNA:   3'- gGAGggGCGGGUCUCa---GGCUCUgCAG- -5'
10926 5' -60.2 NC_002794.1 + 130580 0.68 0.722008
Target:  5'- gCCUCCUCGCCCcccucGGcGUCguccuCGAGACGa- -3'
miRNA:   3'- -GGAGGGGCGGG-----UCuCAG-----GCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 176956 0.68 0.719199
Target:  5'- cCCUCCCCgacggcGCCCGGAcuggcgcuggaucgGUUCGuGACGg- -3'
miRNA:   3'- -GGAGGGG------CGGGUCU--------------CAGGCuCUGCag -5'
10926 5' -60.2 NC_002794.1 + 74837 0.68 0.712619
Target:  5'- gCCUCCCaagaGgCCGGAGagCGGcGCGUCg -3'
miRNA:   3'- -GGAGGGg---CgGGUCUCagGCUcUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 120005 0.68 0.712619
Target:  5'- aCCUCCCgCGCUggaCGGuccgcGUCCGcuuGACGUCc -3'
miRNA:   3'- -GGAGGG-GCGG---GUCu----CAGGCu--CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 43917 0.68 0.711677
Target:  5'- gCUCCgCCGCCCGcgacgacggccccGGGUgcuccucggcCCGGGACGUg -3'
miRNA:   3'- gGAGG-GGCGGGU-------------CUCA----------GGCUCUGCAg -5'
10926 5' -60.2 NC_002794.1 + 119526 0.68 0.702221
Target:  5'- uCCUCCCUcccggcgGCCgGGAGUCgcaaCGAcucGACGUCc -3'
miRNA:   3'- -GGAGGGG-------CGGgUCUCAG----GCU---CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 124002 0.68 0.693665
Target:  5'- aCCUCaccgCCGgCCAGAcUCCGcucGACGUCg -3'
miRNA:   3'- -GGAGg---GGCgGGUCUcAGGCu--CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 133665 0.68 0.693665
Target:  5'- -aUCCCCGUCCGGcucGaCCGGGACGcCc -3'
miRNA:   3'- ggAGGGGCGGGUCu--CaGGCUCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 152756 0.68 0.693665
Target:  5'- uCCUCCCCGCgCuc-GUCCagGAGGCGg- -3'
miRNA:   3'- -GGAGGGGCGgGucuCAGG--CUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 80003 0.68 0.693665
Target:  5'- gCCUgggaCgCGCgaGGGGUCCGGGGCGUCc -3'
miRNA:   3'- -GGAg---GgGCGggUCUCAGGCUCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.