miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 5' -60.2 NC_002794.1 + 2199 0.68 0.693665
Target:  5'- uCCggcgcgCCCCGaccCCCAcGAGUCCGAGucccaGUCc -3'
miRNA:   3'- -GGa-----GGGGC---GGGU-CUCAGGCUCug---CAG- -5'
10926 5' -60.2 NC_002794.1 + 4219 0.66 0.793987
Target:  5'- gCCUCgCCGUCCAGcAGcCCGccgggGGACGg- -3'
miRNA:   3'- -GGAGgGGCGGGUC-UCaGGC-----UCUGCag -5'
10926 5' -60.2 NC_002794.1 + 4638 0.71 0.540143
Target:  5'- gCUCuCUCGCCCgAGAGgCCGAGACcGUUc -3'
miRNA:   3'- gGAG-GGGCGGG-UCUCaGGCUCUG-CAG- -5'
10926 5' -60.2 NC_002794.1 + 11559 0.7 0.578098
Target:  5'- gCCUCCCCGuCCCAGAGcacggcUCCGcucacggccggGGACa-- -3'
miRNA:   3'- -GGAGGGGC-GGGUCUC------AGGC-----------UCUGcag -5'
10926 5' -60.2 NC_002794.1 + 16439 0.68 0.731328
Target:  5'- cCCUCCCgGgCCCcGGGcgCgGAGGCGUg -3'
miRNA:   3'- -GGAGGGgC-GGGuCUCa-GgCUCUGCAg -5'
10926 5' -60.2 NC_002794.1 + 16771 0.66 0.793987
Target:  5'- --aCCCCGCCCgaGGAaccGUCCG-GuCGUCc -3'
miRNA:   3'- ggaGGGGCGGG--UCU---CAGGCuCuGCAG- -5'
10926 5' -60.2 NC_002794.1 + 37331 0.66 0.810829
Target:  5'- aCagCCCGCagCAGAGgacgcggCCGAGAuCGUCu -3'
miRNA:   3'- gGagGGGCGg-GUCUCa------GGCUCU-GCAG- -5'
10926 5' -60.2 NC_002794.1 + 43652 0.7 0.578098
Target:  5'- --gUUCCGCCCGGAGgcgUCG-GACGUCg -3'
miRNA:   3'- ggaGGGGCGGGUCUCa--GGCuCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 43917 0.68 0.711677
Target:  5'- gCUCCgCCGCCCGcgacgacggccccGGGUgcuccucggcCCGGGACGUg -3'
miRNA:   3'- gGAGG-GGCGGGU-------------CUCA----------GGCUCUGCAg -5'
10926 5' -60.2 NC_002794.1 + 48656 0.67 0.776623
Target:  5'- cUCUUgCCGUcgggCCGGGG-CCGGGGCGUUg -3'
miRNA:   3'- -GGAGgGGCG----GGUCUCaGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 65886 0.7 0.578098
Target:  5'- cCCU-CCgGUCCuGGGUCUaGAGACGUCg -3'
miRNA:   3'- -GGAgGGgCGGGuCUCAGG-CUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 74837 0.68 0.712619
Target:  5'- gCCUCCCaagaGgCCGGAGagCGGcGCGUCg -3'
miRNA:   3'- -GGAGGGg---CgGGUCUCagGCUcUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 80003 0.68 0.693665
Target:  5'- gCCUgggaCgCGCgaGGGGUCCGGGGCGUCc -3'
miRNA:   3'- -GGAg---GgGCGggUCUCAGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 82641 0.68 0.731328
Target:  5'- gCCUCCuCCGCCCGGGcgaccgccGUCCaGGAUcUCc -3'
miRNA:   3'- -GGAGG-GGCGGGUCU--------CAGGcUCUGcAG- -5'
10926 5' -60.2 NC_002794.1 + 86393 0.71 0.530779
Target:  5'- uCCUCUuuGUCUccucGGAgcGUCCGAGACGUUu -3'
miRNA:   3'- -GGAGGggCGGG----UCU--CAGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 90194 0.72 0.475998
Target:  5'- gCgcgCUCCGCCCGGAccgCCGGGaACGUCg -3'
miRNA:   3'- gGa--GGGGCGGGUCUca-GGCUC-UGCAG- -5'
10926 5' -60.2 NC_002794.1 + 96454 0.66 0.83499
Target:  5'- uCCg-CCCGCCCgccgucgcagcAGGGUCCGGGuuUGUUg -3'
miRNA:   3'- -GGagGGGCGGG-----------UCUCAGGCUCu-GCAG- -5'
10926 5' -60.2 NC_002794.1 + 98302 0.66 0.819037
Target:  5'- aCUaCUUCGCCCuGAGcUCCGgguuGGugGUCg -3'
miRNA:   3'- gGA-GGGGCGGGuCUC-AGGC----UCugCAG- -5'
10926 5' -60.2 NC_002794.1 + 102296 0.68 0.722008
Target:  5'- aCUCgaCGUCCGGGGguagCCGGGAgGUCu -3'
miRNA:   3'- gGAGggGCGGGUCUCa---GGCUCUgCAG- -5'
10926 5' -60.2 NC_002794.1 + 105648 0.66 0.827093
Target:  5'- gCCUCCgcccgCCGCgCCGGAGccCCGccuGugGUCc -3'
miRNA:   3'- -GGAGG-----GGCG-GGUCUCa-GGCu--CugCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.