miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 5' -60.2 NC_002794.1 + 113306 0.66 0.810829
Target:  5'- cCCUCCCgccgGCCCAgccggcGAGgccgacgccgCCGAGACGg- -3'
miRNA:   3'- -GGAGGGg---CGGGU------CUCa---------GGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 115052 0.69 0.635938
Target:  5'- uCCUCCaCGCCCGGcGUgagcucuuccCCGAGGCGg- -3'
miRNA:   3'- -GGAGGgGCGGGUCuCA----------GGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 116300 0.71 0.530779
Target:  5'- aCCUCCCCGUCCuGGuUCCucGGCGUg -3'
miRNA:   3'- -GGAGGGGCGGGuCUcAGGcuCUGCAg -5'
10926 5' -60.2 NC_002794.1 + 119526 0.68 0.702221
Target:  5'- uCCUCCCUcccggcgGCCgGGAGUCgcaaCGAcucGACGUCc -3'
miRNA:   3'- -GGAGGGG-------CGGgUCUCAG----GCU---CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 120005 0.68 0.712619
Target:  5'- aCCUCCCgCGCUggaCGGuccgcGUCCGcuuGACGUCc -3'
miRNA:   3'- -GGAGGG-GCGG---GUCu----CAGGCu--CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 124002 0.68 0.693665
Target:  5'- aCCUCaccgCCGgCCAGAcUCCGcucGACGUCg -3'
miRNA:   3'- -GGAGg---GGCgGGUCUcAGGCu--CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 128596 0.67 0.749731
Target:  5'- uCCUCCCgCuCCCcGGGUCCGAaGCGa- -3'
miRNA:   3'- -GGAGGG-GcGGGuCUCAGGCUcUGCag -5'
10926 5' -60.2 NC_002794.1 + 130580 0.68 0.722008
Target:  5'- gCCUCCUCGCCCcccucGGcGUCguccuCGAGACGa- -3'
miRNA:   3'- -GGAGGGGCGGG-----UCuCAG-----GCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 131466 0.67 0.785367
Target:  5'- uCCgCCCCGgCCAGAGggccaCCGu--CGUCa -3'
miRNA:   3'- -GGaGGGGCgGGUCUCa----GGCucuGCAG- -5'
10926 5' -60.2 NC_002794.1 + 133665 0.68 0.693665
Target:  5'- -aUCCCCGUCCGGcucGaCCGGGACGcCc -3'
miRNA:   3'- ggAGGGGCGGGUCu--CaGGCUCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 141974 0.71 0.530779
Target:  5'- aCUCCUCGUCgGGAcUCCGGcGGCGUCc -3'
miRNA:   3'- gGAGGGGCGGgUCUcAGGCU-CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 143821 0.7 0.597303
Target:  5'- uCCUCaaggaCCUGCUCgAGAGcUCCGAGACGg- -3'
miRNA:   3'- -GGAG-----GGGCGGG-UCUC-AGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 145062 0.71 0.509477
Target:  5'- gCCUCCUCGCCCGGcgucgGGcgcUCCGgcgcccccgcccucGGGCGUCg -3'
miRNA:   3'- -GGAGGGGCGGGUC-----UC---AGGC--------------UCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 146852 0.69 0.664909
Target:  5'- cUCUCCCgCGCCgCGGcGG-CCGcGGCGUCg -3'
miRNA:   3'- -GGAGGG-GCGG-GUC-UCaGGCuCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 149745 0.76 0.293546
Target:  5'- uUCUCCCCGCCCGcgucggcucccccGUCCGAGucgGCGUCg -3'
miRNA:   3'- -GGAGGGGCGGGUcu-----------CAGGCUC---UGCAG- -5'
10926 5' -60.2 NC_002794.1 + 149922 0.7 0.587686
Target:  5'- gCUUCCCCGCCCGGuGaCCGucucucGGGCG-Cg -3'
miRNA:   3'- -GGAGGGGCGGGUCuCaGGC------UCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 151416 0.66 0.810829
Target:  5'- aCCggcgCgCCCGCCCGGAcGUCgGcGGCGg- -3'
miRNA:   3'- -GGa---G-GGGCGGGUCU-CAGgCuCUGCag -5'
10926 5' -60.2 NC_002794.1 + 151822 0.73 0.441081
Target:  5'- gCUCUCCGCCCccGGGGUCCGcGGCa-- -3'
miRNA:   3'- gGAGGGGCGGG--UCUCAGGCuCUGcag -5'
10926 5' -60.2 NC_002794.1 + 152461 0.66 0.802477
Target:  5'- gCUCCagcaCC-CCCGGgcaGGUCCGGGACGg- -3'
miRNA:   3'- gGAGG----GGcGGGUC---UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 152756 0.68 0.693665
Target:  5'- uCCUCCCCGCgCuc-GUCCagGAGGCGg- -3'
miRNA:   3'- -GGAGGGGCGgGucuCAGG--CUCUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.