miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10926 5' -60.2 NC_002794.1 + 194793 0.7 0.606943
Target:  5'- gCC-CCCC-CCCGGGGguucguUUCGGGGCGUCc -3'
miRNA:   3'- -GGaGGGGcGGGUCUC------AGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 194531 0.72 0.503065
Target:  5'- cCCUCCCUcCCCGG-GUCCGAagaGACGcCu -3'
miRNA:   3'- -GGAGGGGcGGGUCuCAGGCU---CUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 194268 0.7 0.6166
Target:  5'- gUUCCUCGCCaaaaaagaGGaAGUCCGAGGCGcCc -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 194205 0.7 0.6166
Target:  5'- gUUCCUCGCCaaaaaagaGGaAGUCCGAGGCGcCc -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 194142 0.67 0.767764
Target:  5'- gUUCCUCGCCaaaaaagaGGaAGUCCGAGGCa-- -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGcag -5'
10926 5' -60.2 NC_002794.1 + 193933 0.7 0.6166
Target:  5'- gUUCCUCGCCaaaaaagaAGaAGUCCGAGGCGcCc -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCaG- -5'
10926 5' -60.2 NC_002794.1 + 193808 0.71 0.521475
Target:  5'- gUUCCUCGCCaaaacagaGGaAGUCCGAGACGa- -3'
miRNA:   3'- gGAGGGGCGGg-------UC-UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 193734 0.67 0.749731
Target:  5'- -gUCCgCGCCaaaaugaGGaAGUCCGAGACGa- -3'
miRNA:   3'- ggAGGgGCGGg------UC-UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 193620 0.66 0.802477
Target:  5'- -gUCCgCGCCaaaacgaGGaAGUCCGAGGCGa- -3'
miRNA:   3'- ggAGGgGCGGg------UC-UCAGGCUCUGCag -5'
10926 5' -60.2 NC_002794.1 + 192898 0.69 0.626267
Target:  5'- cCC-CCCCGCCCcguGAGUCaaaGcGAgGUCa -3'
miRNA:   3'- -GGaGGGGCGGGu--CUCAGg--CuCUgCAG- -5'
10926 5' -60.2 NC_002794.1 + 184925 0.67 0.785367
Target:  5'- gCUCUauuuaCCGaccaggaaCCCGGAGgggccggCCGAGACGUCc -3'
miRNA:   3'- gGAGG-----GGC--------GGGUCUCa------GGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 183663 0.67 0.758798
Target:  5'- gCCgggCgCCGCUCGGAcGUgCCGGcGGCGUCg -3'
miRNA:   3'- -GGa--GgGGCGGGUCU-CA-GGCU-CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 182095 0.67 0.758798
Target:  5'- aCUCgCCGcCCCGGAGccacCCGGGugGcUCc -3'
miRNA:   3'- gGAGgGGC-GGGUCUCa---GGCUCugC-AG- -5'
10926 5' -60.2 NC_002794.1 + 181702 0.67 0.758798
Target:  5'- gUCgagCCCCGCCgccuGAaccugcgccUCCGAGACGUCa -3'
miRNA:   3'- -GGa--GGGGCGGgu--CUc--------AGGCUCUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 181139 0.66 0.802477
Target:  5'- gCUCgcggcuUCgGCUCGGGGUCCGGcGCGUCa -3'
miRNA:   3'- gGAG------GGgCGGGUCUCAGGCUcUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 179534 0.66 0.819037
Target:  5'- uCC-CCCUGCCCcuGGccggcaCCGAcGACGUCg -3'
miRNA:   3'- -GGaGGGGCGGGucUCa-----GGCU-CUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 176956 0.68 0.719199
Target:  5'- cCCUCCCCgacggcGCCCGGAcuggcgcuggaucgGUUCGuGACGg- -3'
miRNA:   3'- -GGAGGGG------CGGGUCU--------------CAGGCuCUGCag -5'
10926 5' -60.2 NC_002794.1 + 176577 0.67 0.767764
Target:  5'- gUCUCCUgGCCUGGAGcCuCGucGCGUCg -3'
miRNA:   3'- -GGAGGGgCGGGUCUCaG-GCucUGCAG- -5'
10926 5' -60.2 NC_002794.1 + 176497 0.66 0.802477
Target:  5'- cCCgCCCCGCCCGGA--UCG-GGCGg- -3'
miRNA:   3'- -GGaGGGGCGGGUCUcaGGCuCUGCag -5'
10926 5' -60.2 NC_002794.1 + 174164 0.72 0.458362
Target:  5'- gCUCCCCGCCuCGGcGUCCacGGGcgcuGCGUCg -3'
miRNA:   3'- gGAGGGGCGG-GUCuCAGG--CUC----UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.