miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 46581 0.66 0.754217
Target:  5'- gCCgGCGGCGCGgcggcucgcucacggGGGGCGGgUGUagGUa -3'
miRNA:   3'- -GGgCGCCGCGC---------------UCCUGUCgACGa-CGg -5'
10927 3' -61.9 NC_002794.1 + 151640 0.66 0.750598
Target:  5'- gCUCG-GGCGcCGAGGGCucggugccgggcGGCUcGgUGCCg -3'
miRNA:   3'- -GGGCgCCGC-GCUCCUG------------UCGA-CgACGG- -5'
10927 3' -61.9 NC_002794.1 + 158375 0.66 0.750598
Target:  5'- cCCUGCGGCGCGAc--CAGCcGCacGCg -3'
miRNA:   3'- -GGGCGCCGCGCUccuGUCGaCGa-CGg -5'
10927 3' -61.9 NC_002794.1 + 151697 0.66 0.750598
Target:  5'- aCgUGCacGGCGCGAGcGGCGGCUcgucgacuccggGCgaaGCCg -3'
miRNA:   3'- -GgGCG--CCGCGCUC-CUGUCGA------------CGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 152904 0.66 0.750598
Target:  5'- gCCCagcaCGGCGUGgauguAGGcCAGCUGgUGCg -3'
miRNA:   3'- -GGGc---GCCGCGC-----UCCuGUCGACgACGg -5'
10927 3' -61.9 NC_002794.1 + 138957 0.66 0.750598
Target:  5'- gCCGC-GCGUGGccacGGGCgccgGGCUGCcgGCCu -3'
miRNA:   3'- gGGCGcCGCGCU----CCUG----UCGACGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 124508 0.66 0.750598
Target:  5'- gCCagGCGGCGCaGcAGGuGCGGCaGCcGCCc -3'
miRNA:   3'- -GGg-CGCCGCG-C-UCC-UGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 57506 0.66 0.750598
Target:  5'- uUCCGCGcGaGCGAucugcuuguaccGGuCGGCgauggGCUGCCa -3'
miRNA:   3'- -GGGCGC-CgCGCU------------CCuGUCGa----CGACGG- -5'
10927 3' -61.9 NC_002794.1 + 54955 0.66 0.750598
Target:  5'- aCCGCGuG-GCG-GGACcugcaGGCgcGCUGCCu -3'
miRNA:   3'- gGGCGC-CgCGCuCCUG-----UCGa-CGACGG- -5'
10927 3' -61.9 NC_002794.1 + 171673 0.66 0.750598
Target:  5'- cCCCGCGGCacCGA-GACcgAGCgcgGCgGCCc -3'
miRNA:   3'- -GGGCGCCGc-GCUcCUG--UCGa--CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 4203 0.66 0.750598
Target:  5'- gCCCGCcgggggacGGCGCcggcAGcGGCGGCgGCgUGCCc -3'
miRNA:   3'- -GGGCG--------CCGCGc---UC-CUGUCGaCG-ACGG- -5'
10927 3' -61.9 NC_002794.1 + 180656 0.66 0.742399
Target:  5'- aCCGCc-CGCGAuGGCGGCgucccccguccgcggGCUGCCg -3'
miRNA:   3'- gGGCGccGCGCUcCUGUCGa--------------CGACGG- -5'
10927 3' -61.9 NC_002794.1 + 87545 0.66 0.741484
Target:  5'- gCCgGCGGUGgGucuuGGACGGCgGC-GCa -3'
miRNA:   3'- -GGgCGCCGCgCu---CCUGUCGaCGaCGg -5'
10927 3' -61.9 NC_002794.1 + 180540 0.66 0.741484
Target:  5'- uCCCGCaGGUGaCGuguccGGACGGC-GUgGCCa -3'
miRNA:   3'- -GGGCG-CCGC-GCu----CCUGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 140650 0.66 0.741484
Target:  5'- -gCGCGGCG-GAGGcCGGCgGUcgaGCCg -3'
miRNA:   3'- ggGCGCCGCgCUCCuGUCGaCGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 143776 0.66 0.741484
Target:  5'- -gCGCGGCGC----ACAuGCUGCUGgCCg -3'
miRNA:   3'- ggGCGCCGCGcuccUGU-CGACGAC-GG- -5'
10927 3' -61.9 NC_002794.1 + 83108 0.66 0.741484
Target:  5'- cUCCGCGGCgGCGGGGuCGGg-GUgagGUCu -3'
miRNA:   3'- -GGGCGCCG-CGCUCCuGUCgaCGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 8026 0.66 0.741484
Target:  5'- gCUCGgcuCGGCGCGccGAgGGCU-CUGCCc -3'
miRNA:   3'- -GGGC---GCCGCGCucCUgUCGAcGACGG- -5'
10927 3' -61.9 NC_002794.1 + 169788 0.66 0.741484
Target:  5'- cCCCGCGcacgccaCGCG-GGGCAGC-GCcgacgGCCc -3'
miRNA:   3'- -GGGCGCc------GCGCuCCUGUCGaCGa----CGG- -5'
10927 3' -61.9 NC_002794.1 + 44279 0.66 0.739651
Target:  5'- cCCCgGCGGCGCGcgccgccgccgcGGGcccgcgguuccuCGGCUGacgGCCg -3'
miRNA:   3'- -GGG-CGCCGCGC------------UCCu-----------GUCGACga-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.