Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10927 | 3' | -61.9 | NC_002794.1 | + | 44279 | 0.66 | 0.739651 |
Target: 5'- cCCCgGCGGCGCGcgccgccgccgcGGGcccgcgguuccuCGGCUGacgGCCg -3' miRNA: 3'- -GGG-CGCCGCGC------------UCCu-----------GUCGACga-CGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 169788 | 0.66 | 0.741484 |
Target: 5'- cCCCGCGcacgccaCGCG-GGGCAGC-GCcgacgGCCc -3' miRNA: 3'- -GGGCGCc------GCGCuCCUGUCGaCGa----CGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 8026 | 0.66 | 0.741484 |
Target: 5'- gCUCGgcuCGGCGCGccGAgGGCU-CUGCCc -3' miRNA: 3'- -GGGC---GCCGCGCucCUgUCGAcGACGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 83108 | 0.66 | 0.741484 |
Target: 5'- cUCCGCGGCgGCGGGGuCGGg-GUgagGUCu -3' miRNA: 3'- -GGGCGCCG-CGCUCCuGUCgaCGa--CGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 143776 | 0.66 | 0.741484 |
Target: 5'- -gCGCGGCGC----ACAuGCUGCUGgCCg -3' miRNA: 3'- ggGCGCCGCGcuccUGU-CGACGAC-GG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 140650 | 0.66 | 0.741484 |
Target: 5'- -gCGCGGCG-GAGGcCGGCgGUcgaGCCg -3' miRNA: 3'- ggGCGCCGCgCUCCuGUCGaCGa--CGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 180540 | 0.66 | 0.741484 |
Target: 5'- uCCCGCaGGUGaCGuguccGGACGGC-GUgGCCa -3' miRNA: 3'- -GGGCG-CCGC-GCu----CCUGUCGaCGaCGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 87545 | 0.66 | 0.741484 |
Target: 5'- gCCgGCGGUGgGucuuGGACGGCgGC-GCa -3' miRNA: 3'- -GGgCGCCGCgCu---CCUGUCGaCGaCGg -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 57270 | 0.66 | 0.738734 |
Target: 5'- gCgCGuCGGCGCGGcGGAgAGCgGCuuugugagucgcgaUGCCg -3' miRNA: 3'- -GgGC-GCCGCGCU-CCUgUCGaCG--------------ACGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 180656 | 0.66 | 0.742399 |
Target: 5'- aCCGCc-CGCGAuGGCGGCgucccccguccgcggGCUGCCg -3' miRNA: 3'- gGGCGccGCGCUcCUGUCGa--------------CGACGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 151640 | 0.66 | 0.750598 |
Target: 5'- gCUCG-GGCGcCGAGGGCucggugccgggcGGCUcGgUGCCg -3' miRNA: 3'- -GGGCgCCGC-GCUCCUG------------UCGA-CgACGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 158375 | 0.66 | 0.750598 |
Target: 5'- cCCUGCGGCGCGAc--CAGCcGCacGCg -3' miRNA: 3'- -GGGCGCCGCGCUccuGUCGaCGa-CGg -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 4203 | 0.66 | 0.750598 |
Target: 5'- gCCCGCcgggggacGGCGCcggcAGcGGCGGCgGCgUGCCc -3' miRNA: 3'- -GGGCG--------CCGCGc---UC-CUGUCGaCG-ACGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 171673 | 0.66 | 0.750598 |
Target: 5'- cCCCGCGGCacCGA-GACcgAGCgcgGCgGCCc -3' miRNA: 3'- -GGGCGCCGc-GCUcCUG--UCGa--CGaCGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 54955 | 0.66 | 0.750598 |
Target: 5'- aCCGCGuG-GCG-GGACcugcaGGCgcGCUGCCu -3' miRNA: 3'- gGGCGC-CgCGCuCCUG-----UCGa-CGACGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 57506 | 0.66 | 0.750598 |
Target: 5'- uUCCGCGcGaGCGAucugcuuguaccGGuCGGCgauggGCUGCCa -3' miRNA: 3'- -GGGCGC-CgCGCU------------CCuGUCGa----CGACGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 124508 | 0.66 | 0.750598 |
Target: 5'- gCCagGCGGCGCaGcAGGuGCGGCaGCcGCCc -3' miRNA: 3'- -GGg-CGCCGCG-C-UCC-UGUCGaCGaCGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 138957 | 0.66 | 0.750598 |
Target: 5'- gCCGC-GCGUGGccacGGGCgccgGGCUGCcgGCCu -3' miRNA: 3'- gGGCGcCGCGCU----CCUG----UCGACGa-CGG- -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 152904 | 0.66 | 0.750598 |
Target: 5'- gCCCagcaCGGCGUGgauguAGGcCAGCUGgUGCg -3' miRNA: 3'- -GGGc---GCCGCGC-----UCCuGUCGACgACGg -5' |
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10927 | 3' | -61.9 | NC_002794.1 | + | 151697 | 0.66 | 0.750598 |
Target: 5'- aCgUGCacGGCGCGAGcGGCGGCUcgucgacuccggGCgaaGCCg -3' miRNA: 3'- -GgGCG--CCGCGCUC-CUGUCGA------------CGa--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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