miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 183135 0.83 0.080653
Target:  5'- uUCCGCGGCGaCGAGGGCccgguccgcuaccAGgaGCUGCCg -3'
miRNA:   3'- -GGGCGCCGC-GCUCCUG-------------UCgaCGACGG- -5'
10927 3' -61.9 NC_002794.1 + 3840 0.8 0.132347
Target:  5'- gCCGCGGCugcuguuucugugGCGGcGGCGGCUGCUGCUg -3'
miRNA:   3'- gGGCGCCG-------------CGCUcCUGUCGACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 15504 0.78 0.172912
Target:  5'- gCCaCGCagaggacgaccGGCGCGAGGAC-GCUGCcgGCCa -3'
miRNA:   3'- -GG-GCG-----------CCGCGCUCCUGuCGACGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 195591 0.78 0.172912
Target:  5'- gCgCGCGGaCGCGAGGACGGCggcccugGCgcGCCg -3'
miRNA:   3'- -GgGCGCC-GCGCUCCUGUCGa------CGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 94273 0.77 0.185644
Target:  5'- gCCGCGGcCGgGGGGGCGGgUGCcgGCCc -3'
miRNA:   3'- gGGCGCC-GCgCUCCUGUCgACGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 136636 0.77 0.185644
Target:  5'- gCCGCGGCGCGcGaGCucuucgcGCUGCUGCCc -3'
miRNA:   3'- gGGCGCCGCGCuCcUGu------CGACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 153279 0.77 0.194585
Target:  5'- aCCCGCGGaCG-GAGGAgGGCgcgGCgGCCg -3'
miRNA:   3'- -GGGCGCC-GCgCUCCUgUCGa--CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 83014 0.76 0.228892
Target:  5'- gCUCGuCGGCGCGccGcaGCAGCUGCUGCa -3'
miRNA:   3'- -GGGC-GCCGCGCucC--UGUCGACGACGg -5'
10927 3' -61.9 NC_002794.1 + 101808 0.75 0.256423
Target:  5'- gCgGCGGUGCGGGGGCGGCgggggGCgaggGCa -3'
miRNA:   3'- gGgCGCCGCGCUCCUGUCGa----CGa---CGg -5'
10927 3' -61.9 NC_002794.1 + 50745 0.75 0.268173
Target:  5'- -aCGCGGUGUcGGGGCAGCUcauGCUGCg -3'
miRNA:   3'- ggGCGCCGCGcUCCUGUCGA---CGACGg -5'
10927 3' -61.9 NC_002794.1 + 131063 0.75 0.27421
Target:  5'- uUCCGCGGCgaGCGAcgccgcGGACGGCgGCgaGCCg -3'
miRNA:   3'- -GGGCGCCG--CGCU------CCUGUCGaCGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 140575 0.74 0.286608
Target:  5'- gUgGCGGCGaCGAGGGCGGCgGCgGCg -3'
miRNA:   3'- gGgCGCCGC-GCUCCUGUCGaCGaCGg -5'
10927 3' -61.9 NC_002794.1 + 133763 0.74 0.299444
Target:  5'- -aCGCGGCGCGccGGACGGuCUGgUGCg -3'
miRNA:   3'- ggGCGCCGCGCu-CCUGUC-GACgACGg -5'
10927 3' -61.9 NC_002794.1 + 83506 0.74 0.306027
Target:  5'- gCCgGCGGCGgGGcGGGgAGCUGCUGg- -3'
miRNA:   3'- -GGgCGCCGCgCU-CCUgUCGACGACgg -5'
10927 3' -61.9 NC_002794.1 + 87976 0.74 0.31272
Target:  5'- --gGCGGCGCGGcGGguGCgGCUGCCg -3'
miRNA:   3'- gggCGCCGCGCUcCUguCGaCGACGG- -5'
10927 3' -61.9 NC_002794.1 + 85226 0.73 0.326438
Target:  5'- gCCGCGGCgGCGGGGucggguuucucCGGCgGCUGCa -3'
miRNA:   3'- gGGCGCCG-CGCUCCu----------GUCGaCGACGg -5'
10927 3' -61.9 NC_002794.1 + 8800 0.73 0.326438
Target:  5'- gCCCGCGGCccGCcAGGugccgcaGGCUGCUcGCCa -3'
miRNA:   3'- -GGGCGCCG--CGcUCCug-----UCGACGA-CGG- -5'
10927 3' -61.9 NC_002794.1 + 181161 0.73 0.326438
Target:  5'- uCCUGaCGGCGUGGGGAgcGCUGCUcGCg -3'
miRNA:   3'- -GGGC-GCCGCGCUCCUguCGACGA-CGg -5'
10927 3' -61.9 NC_002794.1 + 110328 0.73 0.332755
Target:  5'- cCCCGCGGCuccgcccaacaugGCcccGGGACGGCUucCUGCCa -3'
miRNA:   3'- -GGGCGCCG-------------CGc--UCCUGUCGAc-GACGG- -5'
10927 3' -61.9 NC_002794.1 + 73627 0.73 0.347841
Target:  5'- --aGCGGCGCc-GGAC-GCUGCUGUCg -3'
miRNA:   3'- gggCGCCGCGcuCCUGuCGACGACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.