miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 73573 0.73 0.355195
Target:  5'- uCCUGgacgGGCGCGAGGAguGCccGCUGgCCg -3'
miRNA:   3'- -GGGCg---CCGCGCUCCUguCGa-CGAC-GG- -5'
10927 3' -61.9 NC_002794.1 + 132407 0.73 0.361907
Target:  5'- gCCGCGGCGgcgacgaugacgaCGAGG-CGGCgGCcGCCg -3'
miRNA:   3'- gGGCGCCGC-------------GCUCCuGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 79730 0.73 0.362658
Target:  5'- gCCGCGGCgGCGGcGGCGGCgGCcaggGCCu -3'
miRNA:   3'- gGGCGCCG-CGCUcCUGUCGaCGa---CGG- -5'
10927 3' -61.9 NC_002794.1 + 48709 0.73 0.362658
Target:  5'- cCCCGgGGcCGCGAGGGcCAGCUGga-CCg -3'
miRNA:   3'- -GGGCgCC-GCGCUCCU-GUCGACgacGG- -5'
10927 3' -61.9 NC_002794.1 + 124560 0.72 0.370229
Target:  5'- gCCGcCGGCGCGcucGGGCGGCgaGCgcGCCa -3'
miRNA:   3'- gGGC-GCCGCGCu--CCUGUCGa-CGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 101582 0.72 0.370229
Target:  5'- -gCGCGGCGCGgcccgagcggGGGGCGGCUcggGCgcGCCg -3'
miRNA:   3'- ggGCGCCGCGC----------UCCUGUCGA---CGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 137027 0.72 0.401575
Target:  5'- gCCUGCcGCGCGAGGacgccgacguGCAGCUcGUcGCCg -3'
miRNA:   3'- -GGGCGcCGCGCUCC----------UGUCGA-CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 53638 0.72 0.401575
Target:  5'- gCgGCGGUGCGGGGAgCGGCggagGCgGCg -3'
miRNA:   3'- gGgCGCCGCGCUCCU-GUCGa---CGaCGg -5'
10927 3' -61.9 NC_002794.1 + 81975 0.72 0.401575
Target:  5'- gCCGCGGCGCGcgucGGcGCGGuCUGCaggaagGCCu -3'
miRNA:   3'- gGGCGCCGCGCu---CC-UGUC-GACGa-----CGG- -5'
10927 3' -61.9 NC_002794.1 + 47534 0.72 0.408857
Target:  5'- aCCGCGGUucgaccuGCGuuGGCAGCUGCUcuGCa -3'
miRNA:   3'- gGGCGCCG-------CGCucCUGUCGACGA--CGg -5'
10927 3' -61.9 NC_002794.1 + 45278 0.72 0.409671
Target:  5'- gCCUGCccucgGGCGCccGAGGACGGCcggGC-GCCg -3'
miRNA:   3'- -GGGCG-----CCGCG--CUCCUGUCGa--CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 137316 0.72 0.409671
Target:  5'- gCCGCGGCGCGc--GC-GCUGCUGgCg -3'
miRNA:   3'- gGGCGCCGCGCuccUGuCGACGACgG- -5'
10927 3' -61.9 NC_002794.1 + 175430 0.71 0.417868
Target:  5'- cCCCGCGcCG-GAGGACGugcaccGCUGgaGCCg -3'
miRNA:   3'- -GGGCGCcGCgCUCCUGU------CGACgaCGG- -5'
10927 3' -61.9 NC_002794.1 + 16182 0.71 0.417868
Target:  5'- aCCCGCGGCgGCGAcGGuggcgGCGGCgacggugGCgacGCCg -3'
miRNA:   3'- -GGGCGCCG-CGCU-CC-----UGUCGa------CGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 69621 0.71 0.417868
Target:  5'- aCCGUGGCgaucguggcgcGCGAGGuCGGCgGCUGgCu -3'
miRNA:   3'- gGGCGCCG-----------CGCUCCuGUCGaCGACgG- -5'
10927 3' -61.9 NC_002794.1 + 16247 0.71 0.426164
Target:  5'- --aGCGGCGCGAGcGACuGCcgggcGCUGCg -3'
miRNA:   3'- gggCGCCGCGCUC-CUGuCGa----CGACGg -5'
10927 3' -61.9 NC_002794.1 + 157393 0.71 0.432029
Target:  5'- gCCGCGGCGCgcccuuuaugggcgGAGGaagcGCGGCgGC-GCCg -3'
miRNA:   3'- gGGCGCCGCG--------------CUCC----UGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 106397 0.71 0.434557
Target:  5'- aCCCGCGGCucCGGGGACuccGGCcUGCggUGUCu -3'
miRNA:   3'- -GGGCGCCGc-GCUCCUG---UCG-ACG--ACGG- -5'
10927 3' -61.9 NC_002794.1 + 64831 0.71 0.434557
Target:  5'- uCgUGCGGCGCGGc--CGGCUGCcGCCg -3'
miRNA:   3'- -GgGCGCCGCGCUccuGUCGACGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 175470 0.71 0.443045
Target:  5'- -aCGCGGUGCGgcGGGAcCGGgaGCgggGCCa -3'
miRNA:   3'- ggGCGCCGCGC--UCCU-GUCgaCGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.