miRNA display CGI


Results 21 - 40 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 57270 0.66 0.738734
Target:  5'- gCgCGuCGGCGCGGcGGAgAGCgGCuuugugagucgcgaUGCCg -3'
miRNA:   3'- -GgGC-GCCGCGCU-CCUgUCGaCG--------------ACGG- -5'
10927 3' -61.9 NC_002794.1 + 105032 0.66 0.732287
Target:  5'- gCCCaucaguCGGUaCGAGGGCGGCgUGCUGaCg -3'
miRNA:   3'- -GGGc-----GCCGcGCUCCUGUCG-ACGACgG- -5'
10927 3' -61.9 NC_002794.1 + 85564 0.66 0.732287
Target:  5'- gCCCGagaGcCGCGGGGACucuccGCUcGCcGCCg -3'
miRNA:   3'- -GGGCg--CcGCGCUCCUGu----CGA-CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 2791 0.66 0.732287
Target:  5'- gCUGCGGgccguCGCG-GGACAGCcGCaGCa -3'
miRNA:   3'- gGGCGCC-----GCGCuCCUGUCGaCGaCGg -5'
10927 3' -61.9 NC_002794.1 + 12330 0.66 0.723012
Target:  5'- gCCGUGcGCGCcccguccgcccGGGGACA-CUGCgcGCCg -3'
miRNA:   3'- gGGCGC-CGCG-----------CUCCUGUcGACGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 130615 0.66 0.723012
Target:  5'- gCCGCGGCgGCGAuccGGccucgccgaGCGGCgGC-GCCu -3'
miRNA:   3'- gGGCGCCG-CGCU---CC---------UGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 1349 0.66 0.723012
Target:  5'- gCCCGCGGCccGCGugccgccGGcccaGCAGC-GCcGCCa -3'
miRNA:   3'- -GGGCGCCG--CGCu------CC----UGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 195089 0.66 0.713668
Target:  5'- gCCCGCGGUGCauuuGGcACGG-UGCcaaccgUGCCg -3'
miRNA:   3'- -GGGCGCCGCGcu--CC-UGUCgACG------ACGG- -5'
10927 3' -61.9 NC_002794.1 + 101464 0.66 0.713668
Target:  5'- gUCGCGcGUGCGGGGACcGCggugugggGCgcGCCc -3'
miRNA:   3'- gGGCGC-CGCGCUCCUGuCGa-------CGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 123440 0.66 0.713668
Target:  5'- gCCGCGGCG-GAGGAggagcCGGCggagggaccgGCggcGCCc -3'
miRNA:   3'- gGGCGCCGCgCUCCU-----GUCGa---------CGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 74464 0.66 0.713668
Target:  5'- aCCGCGGCcgGCGccGGGACcGCgaccGUcGCCg -3'
miRNA:   3'- gGGCGCCG--CGC--UCCUGuCGa---CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 176952 0.66 0.713668
Target:  5'- cCCCGaCGGCGCccGGACuGGC-GCUGg- -3'
miRNA:   3'- -GGGC-GCCGCGcuCCUG-UCGaCGACgg -5'
10927 3' -61.9 NC_002794.1 + 69187 0.66 0.713668
Target:  5'- gCCGCGGCGagggcccgaauCGGGGAgGGagggGC-GCCg -3'
miRNA:   3'- gGGCGCCGC-----------GCUCCUgUCga--CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 134702 0.66 0.71273
Target:  5'- cCCCGaGcGCGCGGuccGGAuCGGCggcuggucgcucgUGCUGCCc -3'
miRNA:   3'- -GGGCgC-CGCGCU---CCU-GUCG-------------ACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 11396 0.66 0.705206
Target:  5'- gCCCGCGggccgcgcgaacggcGCGCGGGGccccggacgcccggGCGGC-GCggGCCc -3'
miRNA:   3'- -GGGCGC---------------CGCGCUCC--------------UGUCGaCGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 55951 0.66 0.704263
Target:  5'- gCCGCaGGC-CGucGGACGGCacgcaGCUGUCg -3'
miRNA:   3'- gGGCG-CCGcGCu-CCUGUCGa----CGACGG- -5'
10927 3' -61.9 NC_002794.1 + 56325 0.66 0.704263
Target:  5'- gCCCGaggaucagguaGGUGCGGuGGuagauccgGCGGCUGCUGUUu -3'
miRNA:   3'- -GGGCg----------CCGCGCU-CC--------UGUCGACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 100953 0.66 0.704263
Target:  5'- -aCGUGGCGacccugaaCGAGGugGagagGCUGCUGUg -3'
miRNA:   3'- ggGCGCCGC--------GCUCCugU----CGACGACGg -5'
10927 3' -61.9 NC_002794.1 + 161147 0.66 0.704263
Target:  5'- gCCCGcCGGCGCcacGAGG-C-GCggGCgGCCg -3'
miRNA:   3'- -GGGC-GCCGCG---CUCCuGuCGa-CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 139663 0.66 0.704263
Target:  5'- gCCGCGGCagGCGuAGGcgccccgcaugaGCAGCUcGUUGgCCu -3'
miRNA:   3'- gGGCGCCG--CGC-UCC------------UGUCGA-CGAC-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.