miRNA display CGI


Results 41 - 60 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 55951 0.66 0.704263
Target:  5'- gCCGCaGGC-CGucGGACGGCacgcaGCUGUCg -3'
miRNA:   3'- gGGCG-CCGcGCu-CCUGUCGa----CGACGG- -5'
10927 3' -61.9 NC_002794.1 + 157981 0.66 0.700485
Target:  5'- uCUCG-GGCgGCGGGGGCGGUggcggcggcagcgGCUcGCCg -3'
miRNA:   3'- -GGGCgCCG-CGCUCCUGUCGa------------CGA-CGG- -5'
10927 3' -61.9 NC_002794.1 + 161782 0.67 0.694804
Target:  5'- uCCCGcCGGCGgccGGGCAGCcgucggGCgGCCc -3'
miRNA:   3'- -GGGC-GCCGCgcuCCUGUCGa-----CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 104782 0.67 0.694804
Target:  5'- gCCGUGGUGgGcuacGGGCucaaggAGCUGCUGUa -3'
miRNA:   3'- gGGCGCCGCgCu---CCUG------UCGACGACGg -5'
10927 3' -61.9 NC_002794.1 + 104384 0.67 0.694804
Target:  5'- gCCggGCGaGCGCGAc--CAGCUGUUGCUg -3'
miRNA:   3'- gGG--CGC-CGCGCUccuGUCGACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 15908 0.67 0.694804
Target:  5'- gCCGgGGaGCGAGcGACAGCaGgaGCg -3'
miRNA:   3'- gGGCgCCgCGCUC-CUGUCGaCgaCGg -5'
10927 3' -61.9 NC_002794.1 + 60117 0.67 0.694804
Target:  5'- gCCGCGccGCGCccucGAGGAUcaGGCggugcugGCUGUCg -3'
miRNA:   3'- gGGCGC--CGCG----CUCCUG--UCGa------CGACGG- -5'
10927 3' -61.9 NC_002794.1 + 11283 0.67 0.694804
Target:  5'- gCCGCGGCgGCGGcGGcCAcGC-GCgGCCg -3'
miRNA:   3'- gGGCGCCG-CGCU-CCuGU-CGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 123389 0.67 0.685298
Target:  5'- cCCCGCGGCGgcgccgaaaagaCGAucacgcagucGGGCAcGCgGCaGCCg -3'
miRNA:   3'- -GGGCGCCGC------------GCU----------CCUGU-CGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 176588 0.67 0.685298
Target:  5'- cCCCGUGGCGCGucuccuGGCcUGgaGCCu -3'
miRNA:   3'- -GGGCGCCGCGCuccug-UCG-ACgaCGG- -5'
10927 3' -61.9 NC_002794.1 + 106188 0.67 0.685298
Target:  5'- aCgCGCGGCGguGGGAgGGCUGUUcGCg -3'
miRNA:   3'- -GgGCGCCGCgcUCCUgUCGACGA-CGg -5'
10927 3' -61.9 NC_002794.1 + 52902 0.67 0.684345
Target:  5'- gUCgGCGGCGUcgagcuccucgucGAGG--GGCUGCgUGCCc -3'
miRNA:   3'- -GGgCGCCGCG-------------CUCCugUCGACG-ACGG- -5'
10927 3' -61.9 NC_002794.1 + 121785 0.67 0.675754
Target:  5'- gUgGCGGCccuccucgccgaGUcGGGACAGCUGCgGCUg -3'
miRNA:   3'- gGgCGCCG------------CGcUCCUGUCGACGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 103611 0.67 0.675754
Target:  5'- gCCCucgGCGGCGuCGcuGGCGGCgGC-GCCg -3'
miRNA:   3'- -GGG---CGCCGC-GCucCUGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 9018 0.67 0.675754
Target:  5'- gCCCGaCaGCGCGcGGGC-GCUGCcgUGCa -3'
miRNA:   3'- -GGGC-GcCGCGCuCCUGuCGACG--ACGg -5'
10927 3' -61.9 NC_002794.1 + 187098 0.67 0.666177
Target:  5'- uCgCGaCGGCGUGAaGACGGCgugggaGCUGCa -3'
miRNA:   3'- -GgGC-GCCGCGCUcCUGUCGa-----CGACGg -5'
10927 3' -61.9 NC_002794.1 + 50857 0.67 0.666177
Target:  5'- gUCCGCcuGGCGCa---GCAGCUGC-GCCa -3'
miRNA:   3'- -GGGCG--CCGCGcuccUGUCGACGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 38347 0.67 0.666177
Target:  5'- aCCgGCGGaCGCGcugGGGAUccaguuGGCgGCuUGCCa -3'
miRNA:   3'- -GGgCGCC-GCGC---UCCUG------UCGaCG-ACGG- -5'
10927 3' -61.9 NC_002794.1 + 81522 0.67 0.663299
Target:  5'- uCCCGCcGCaGCGgcucguccgccgccAGGGcCGGCUGCaggGCCg -3'
miRNA:   3'- -GGGCGcCG-CGC--------------UCCU-GUCGACGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 48888 0.67 0.656577
Target:  5'- aCCGCcuGuCGCGAGGuCGGC-GCcGCCg -3'
miRNA:   3'- gGGCGc-C-GCGCUCCuGUCGaCGaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.