miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 1349 0.66 0.723012
Target:  5'- gCCCGCGGCccGCGugccgccGGcccaGCAGC-GCcGCCa -3'
miRNA:   3'- -GGGCGCCG--CGCu------CC----UGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 2118 0.68 0.61807
Target:  5'- gCCCGCGGCuucgGCGAGcGACcgccggccccGCUcGCUcGCCc -3'
miRNA:   3'- -GGGCGCCG----CGCUC-CUGu---------CGA-CGA-CGG- -5'
10927 3' -61.9 NC_002794.1 + 2791 0.66 0.732287
Target:  5'- gCUGCGGgccguCGCG-GGACAGCcGCaGCa -3'
miRNA:   3'- gGGCGCC-----GCGCuCCUGUCGaCGaCGg -5'
10927 3' -61.9 NC_002794.1 + 2843 0.69 0.523264
Target:  5'- gCCaGCGGCGUGu--ACAuCUGCUGCCg -3'
miRNA:   3'- gGG-CGCCGCGCuccUGUcGACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 3246 0.68 0.589264
Target:  5'- cUCCGCcaGGUGCGGacagucGGGCGGCcGCUccaGCCg -3'
miRNA:   3'- -GGGCG--CCGCGCU------CCUGUCGaCGA---CGG- -5'
10927 3' -61.9 NC_002794.1 + 3840 0.8 0.132347
Target:  5'- gCCGCGGCugcuguuucugugGCGGcGGCGGCUGCUGCUg -3'
miRNA:   3'- gGGCGCCG-------------CGCUcCUGUCGACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 3988 0.69 0.532542
Target:  5'- gCCgGCGGCGgaGGGGGCGGCggagGCgggaucgGCa -3'
miRNA:   3'- -GGgCGCCGCg-CUCCUGUCGa---CGa------CGg -5'
10927 3' -61.9 NC_002794.1 + 4203 0.66 0.750598
Target:  5'- gCCCGCcgggggacGGCGCcggcAGcGGCGGCgGCgUGCCc -3'
miRNA:   3'- -GGGCG--------CCGCGc---UC-CUGUCGaCG-ACGG- -5'
10927 3' -61.9 NC_002794.1 + 7313 0.7 0.469055
Target:  5'- gUCGCGGCgGCGGGuACuGCUGCcgcacgUGCCg -3'
miRNA:   3'- gGGCGCCG-CGCUCcUGuCGACG------ACGG- -5'
10927 3' -61.9 NC_002794.1 + 7493 0.67 0.646959
Target:  5'- gCCgGCGGCGgcCGAGGGCguucucccgGGCUuCUcGCCg -3'
miRNA:   3'- -GGgCGCCGC--GCUCCUG---------UCGAcGA-CGG- -5'
10927 3' -61.9 NC_002794.1 + 7611 0.68 0.627699
Target:  5'- aCCgGCGGCgGCGGcGG-UAGCgGCggGCCg -3'
miRNA:   3'- -GGgCGCCG-CGCU-CCuGUCGaCGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 8026 0.66 0.741484
Target:  5'- gCUCGgcuCGGCGCGccGAgGGCU-CUGCCc -3'
miRNA:   3'- -GGGC---GCCGCGCucCUgUCGAcGACGG- -5'
10927 3' -61.9 NC_002794.1 + 8800 0.73 0.326438
Target:  5'- gCCCGCGGCccGCcAGGugccgcaGGCUGCUcGCCa -3'
miRNA:   3'- -GGGCGCCG--CGcUCCug-----UCGACGA-CGG- -5'
10927 3' -61.9 NC_002794.1 + 9018 0.67 0.675754
Target:  5'- gCCCGaCaGCGCGcGGGC-GCUGCcgUGCa -3'
miRNA:   3'- -GGGC-GcCGCGCuCCUGuCGACG--ACGg -5'
10927 3' -61.9 NC_002794.1 + 9586 0.68 0.589264
Target:  5'- aCCGCcuGGCGCGGcGGcaccGCGGCcagGCgGCCg -3'
miRNA:   3'- gGGCG--CCGCGCU-CC----UGUCGa--CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 11283 0.67 0.694804
Target:  5'- gCCGCGGCgGCGGcGGcCAcGC-GCgGCCg -3'
miRNA:   3'- gGGCGCCG-CGCU-CCuGU-CGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 11338 0.68 0.57971
Target:  5'- gCgCGCGGCGCGGGcGAC-GCcGCccaccGCCg -3'
miRNA:   3'- -GgGCGCCGCGCUC-CUGuCGaCGa----CGG- -5'
10927 3' -61.9 NC_002794.1 + 11396 0.66 0.705206
Target:  5'- gCCCGCGggccgcgcgaacggcGCGCGGGGccccggacgcccggGCGGC-GCggGCCc -3'
miRNA:   3'- -GGGCGC---------------CGCGCUCC--------------UGUCGaCGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 12330 0.66 0.723012
Target:  5'- gCCGUGcGCGCcccguccgcccGGGGACA-CUGCgcGCCg -3'
miRNA:   3'- gGGCGC-CGCG-----------CUCCUGUcGACGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 15504 0.78 0.172912
Target:  5'- gCCaCGCagaggacgaccGGCGCGAGGAC-GCUGCcgGCCa -3'
miRNA:   3'- -GG-GCG-----------CCGCGCUCCUGuCGACGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.