miRNA display CGI


Results 21 - 40 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 15908 0.67 0.694804
Target:  5'- gCCGgGGaGCGAGcGACAGCaGgaGCg -3'
miRNA:   3'- gGGCgCCgCGCUC-CUGUCGaCgaCGg -5'
10927 3' -61.9 NC_002794.1 + 16182 0.71 0.417868
Target:  5'- aCCCGCGGCgGCGAcGGuggcgGCGGCgacggugGCgacGCCg -3'
miRNA:   3'- -GGGCGCCG-CGCU-CC-----UGUCGa------CGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 16247 0.71 0.426164
Target:  5'- --aGCGGCGCGAGcGACuGCcgggcGCUGCg -3'
miRNA:   3'- gggCGCCGCGCUC-CUGuCGa----CGACGg -5'
10927 3' -61.9 NC_002794.1 + 38347 0.67 0.666177
Target:  5'- aCCgGCGGaCGCGcugGGGAUccaguuGGCgGCuUGCCa -3'
miRNA:   3'- -GGgCGCC-GCGC---UCCUG------UCGaCG-ACGG- -5'
10927 3' -61.9 NC_002794.1 + 41485 0.7 0.477898
Target:  5'- gCCGCGGCgGCGGcGGGCAcGCccguucgcgUGgUGCCg -3'
miRNA:   3'- gGGCGCCG-CGCU-CCUGU-CG---------ACgACGG- -5'
10927 3' -61.9 NC_002794.1 + 43260 0.69 0.560706
Target:  5'- cCCUGCGGCGCGGGcccaaGCGGCgcaaacGCUcGUCc -3'
miRNA:   3'- -GGGCGCCGCGCUCc----UGUCGa-----CGA-CGG- -5'
10927 3' -61.9 NC_002794.1 + 43804 0.68 0.605567
Target:  5'- aCCGCGGcCGgcaaauaccggaucCGAGGACuGCUcUUGCCc -3'
miRNA:   3'- gGGCGCC-GC--------------GCUCCUGuCGAcGACGG- -5'
10927 3' -61.9 NC_002794.1 + 44279 0.66 0.739651
Target:  5'- cCCCgGCGGCGCGcgccgccgccgcGGGcccgcgguuccuCGGCUGacgGCCg -3'
miRNA:   3'- -GGG-CGCCGCGC------------UCCu-----------GUCGACga-CGG- -5'
10927 3' -61.9 NC_002794.1 + 45056 0.68 0.598846
Target:  5'- cCCCGCGGCG-GAcGGccgaGCcGCUGgaGCUg -3'
miRNA:   3'- -GGGCGCCGCgCU-CC----UGuCGACgaCGG- -5'
10927 3' -61.9 NC_002794.1 + 45278 0.72 0.409671
Target:  5'- gCCUGCccucgGGCGCccGAGGACGGCcggGC-GCCg -3'
miRNA:   3'- -GGGCG-----CCGCG--CUCCUGUCGa--CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 45669 0.69 0.523264
Target:  5'- uUCGUGGU--GGGGccucacgacgaGCGGCUGCUGCCg -3'
miRNA:   3'- gGGCGCCGcgCUCC-----------UGUCGACGACGG- -5'
10927 3' -61.9 NC_002794.1 + 46581 0.66 0.754217
Target:  5'- gCCgGCGGCGCGgcggcucgcucacggGGGGCGGgUGUagGUa -3'
miRNA:   3'- -GGgCGCCGCGC---------------UCCUGUCgACGa-CGg -5'
10927 3' -61.9 NC_002794.1 + 47534 0.72 0.408857
Target:  5'- aCCGCGGUucgaccuGCGuuGGCAGCUGCUcuGCa -3'
miRNA:   3'- gGGCGCCG-------CGCucCUGUCGACGA--CGg -5'
10927 3' -61.9 NC_002794.1 + 47718 0.68 0.602686
Target:  5'- gCCGcCGGgGCGAGGGCGGUcGCgacggaaggaggggGUCg -3'
miRNA:   3'- gGGC-GCCgCGCUCCUGUCGaCGa-------------CGG- -5'
10927 3' -61.9 NC_002794.1 + 47778 0.7 0.51405
Target:  5'- --aGUGGCcucgaGCGAGGAgCAGCUGCcGCUc -3'
miRNA:   3'- gggCGCCG-----CGCUCCU-GUCGACGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 48709 0.73 0.362658
Target:  5'- cCCCGgGGcCGCGAGGGcCAGCUGga-CCg -3'
miRNA:   3'- -GGGCgCC-GCGCUCCU-GUCGACgacGG- -5'
10927 3' -61.9 NC_002794.1 + 48888 0.67 0.656577
Target:  5'- aCCGCcuGuCGCGAGGuCGGC-GCcGCCg -3'
miRNA:   3'- gGGCGc-C-GCGCUCCuGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 50560 0.68 0.624809
Target:  5'- cCCCGCugucguauuaaaccGGCGCGcggcGGGCGGC-GCUcggGCCc -3'
miRNA:   3'- -GGGCG--------------CCGCGCu---CCUGUCGaCGA---CGG- -5'
10927 3' -61.9 NC_002794.1 + 50745 0.75 0.268173
Target:  5'- -aCGCGGUGUcGGGGCAGCUcauGCUGCg -3'
miRNA:   3'- ggGCGCCGCGcUCCUGUCGA---CGACGg -5'
10927 3' -61.9 NC_002794.1 + 50857 0.67 0.666177
Target:  5'- gUCCGCcuGGCGCa---GCAGCUGC-GCCa -3'
miRNA:   3'- -GGGCG--CCGCGcuccUGUCGACGaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.