miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 3' -61.9 NC_002794.1 + 195591 0.78 0.172912
Target:  5'- gCgCGCGGaCGCGAGGACGGCggcccugGCgcGCCg -3'
miRNA:   3'- -GgGCGCC-GCGCUCCUGUCGa------CGa-CGG- -5'
10927 3' -61.9 NC_002794.1 + 195089 0.66 0.713668
Target:  5'- gCCCGCGGUGCauuuGGcACGG-UGCcaaccgUGCCg -3'
miRNA:   3'- -GGGCGCCGCGcu--CC-UGUCgACG------ACGG- -5'
10927 3' -61.9 NC_002794.1 + 192099 0.68 0.636367
Target:  5'- aCgGCGGgGCGGGGGagugacuCAGCgGgaGCCc -3'
miRNA:   3'- gGgCGCCgCGCUCCU-------GUCGaCgaCGG- -5'
10927 3' -61.9 NC_002794.1 + 187098 0.67 0.666177
Target:  5'- uCgCGaCGGCGUGAaGACGGCgugggaGCUGCa -3'
miRNA:   3'- -GgGC-GCCGCGCUcCUGUCGa-----CGACGg -5'
10927 3' -61.9 NC_002794.1 + 185212 0.68 0.627699
Target:  5'- --aGCGGCGCGAGcccGACgAGCgucUGgaGCCg -3'
miRNA:   3'- gggCGCCGCGCUC---CUG-UCG---ACgaCGG- -5'
10927 3' -61.9 NC_002794.1 + 183135 0.83 0.080653
Target:  5'- uUCCGCGGCGaCGAGGGCccgguccgcuaccAGgaGCUGCCg -3'
miRNA:   3'- -GGGCGCCGC-GCUCCUG-------------UCgaCGACGG- -5'
10927 3' -61.9 NC_002794.1 + 181161 0.73 0.326438
Target:  5'- uCCUGaCGGCGUGGGGAgcGCUGCUcGCg -3'
miRNA:   3'- -GGGC-GCCGCGCUCCUguCGACGA-CGg -5'
10927 3' -61.9 NC_002794.1 + 180656 0.66 0.742399
Target:  5'- aCCGCc-CGCGAuGGCGGCgucccccguccgcggGCUGCCg -3'
miRNA:   3'- gGGCGccGCGCUcCUGUCGa--------------CGACGG- -5'
10927 3' -61.9 NC_002794.1 + 180540 0.66 0.741484
Target:  5'- uCCCGCaGGUGaCGuguccGGACGGC-GUgGCCa -3'
miRNA:   3'- -GGGCG-CCGC-GCu----CCUGUCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 177866 0.68 0.597887
Target:  5'- gCCGcCGGCGaguacuaCGAGGACGGCgUGUU-CCa -3'
miRNA:   3'- gGGC-GCCGC-------GCUCCUGUCG-ACGAcGG- -5'
10927 3' -61.9 NC_002794.1 + 176952 0.66 0.713668
Target:  5'- cCCCGaCGGCGCccGGACuGGC-GCUGg- -3'
miRNA:   3'- -GGGC-GCCGCGcuCCUG-UCGaCGACgg -5'
10927 3' -61.9 NC_002794.1 + 176588 0.67 0.685298
Target:  5'- cCCCGUGGCGCGucuccuGGCcUGgaGCCu -3'
miRNA:   3'- -GGGCGCCGCGCuccug-UCG-ACgaCGG- -5'
10927 3' -61.9 NC_002794.1 + 176326 0.67 0.656577
Target:  5'- -gCGCGGCGCGGcccgccggugucGGACccGGaCUGCUucgagGCCg -3'
miRNA:   3'- ggGCGCCGCGCU------------CCUG--UC-GACGA-----CGG- -5'
10927 3' -61.9 NC_002794.1 + 176046 0.69 0.541878
Target:  5'- aCCGCGcGC-CGGacuGGAUcaAGCUGCUGCa -3'
miRNA:   3'- gGGCGC-CGcGCU---CCUG--UCGACGACGg -5'
10927 3' -61.9 NC_002794.1 + 175470 0.71 0.443045
Target:  5'- -aCGCGGUGCGgcGGGAcCGGgaGCgggGCCa -3'
miRNA:   3'- ggGCGCCGCGC--UCCU-GUCgaCGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 175430 0.71 0.417868
Target:  5'- cCCCGCGcCG-GAGGACGugcaccGCUGgaGCCg -3'
miRNA:   3'- -GGGCGCcGCgCUCCUGU------CGACgaCGG- -5'
10927 3' -61.9 NC_002794.1 + 172243 0.68 0.637331
Target:  5'- cCCCGCgGGCGCccGGAC-GC-GCgGCCc -3'
miRNA:   3'- -GGGCG-CCGCGcuCCUGuCGaCGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 171911 0.68 0.61807
Target:  5'- gCCGCGGCGCacuuggcuccGAGc-CAGCgGCgagGCCg -3'
miRNA:   3'- gGGCGCCGCG----------CUCcuGUCGaCGa--CGG- -5'
10927 3' -61.9 NC_002794.1 + 171673 0.66 0.750598
Target:  5'- cCCCGCGGCacCGA-GACcgAGCgcgGCgGCCc -3'
miRNA:   3'- -GGGCGCCGc-GCUcCUG--UCGa--CGaCGG- -5'
10927 3' -61.9 NC_002794.1 + 169788 0.66 0.741484
Target:  5'- cCCCGCGcacgccaCGCG-GGGCAGC-GCcgacgGCCc -3'
miRNA:   3'- -GGGCGCc------GCGCuCCUGUCGaCGa----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.