miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 5' -58 NC_002794.1 + 1764 0.66 0.876817
Target:  5'- gUGuGCCCCGaacacgUGCUgCGGCACCGcGCGc -3'
miRNA:   3'- gACcCGGGGCa-----ACGA-GUUGUGGU-CGU- -5'
10927 5' -58 NC_002794.1 + 138459 0.66 0.876817
Target:  5'- --cGGCUCCGgcGCccgCGugGCCGGCGu -3'
miRNA:   3'- gacCCGGGGCaaCGa--GUugUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 52144 0.66 0.876817
Target:  5'- -cGGGCCCCGgcggGCgUCGuccuCGCCcGCc -3'
miRNA:   3'- gaCCCGGGGCaa--CG-AGUu---GUGGuCGu -5'
10927 5' -58 NC_002794.1 + 143085 0.66 0.868946
Target:  5'- -cGGGCCgcgggaUCGUgacGCUCGagccgcucgucggACGCCGGCAg -3'
miRNA:   3'- gaCCCGG------GGCAa--CGAGU-------------UGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 138527 0.66 0.862321
Target:  5'- -cGcGUCCUGcugcagcUGCUCGACGCCAGCu -3'
miRNA:   3'- gaCcCGGGGCa------ACGAGUUGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 133064 0.66 0.862321
Target:  5'- -cGGGCCCCuaccuCUCcggcACGCCGGCGc -3'
miRNA:   3'- gaCCCGGGGcaac-GAGu---UGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 15285 0.66 0.862321
Target:  5'- -gGGGCCCaGUUGUcCcACGgCAGCAg -3'
miRNA:   3'- gaCCCGGGgCAACGaGuUGUgGUCGU- -5'
10927 5' -58 NC_002794.1 + 183050 0.66 0.862321
Target:  5'- -cGGGgCCCG-UGCUCGAggucUACCccgAGCAg -3'
miRNA:   3'- gaCCCgGGGCaACGAGUU----GUGG---UCGU- -5'
10927 5' -58 NC_002794.1 + 156297 0.66 0.854771
Target:  5'- -cGGcGCCCUGUaccccgUGCUCAAgUACgAGCGg -3'
miRNA:   3'- gaCC-CGGGGCA------ACGAGUU-GUGgUCGU- -5'
10927 5' -58 NC_002794.1 + 127096 0.66 0.854771
Target:  5'- -cGGGCCgCCGggGCgccgGACGCCcGGCu -3'
miRNA:   3'- gaCCCGG-GGCaaCGag--UUGUGG-UCGu -5'
10927 5' -58 NC_002794.1 + 9944 0.66 0.854771
Target:  5'- -cGGGCCCCuc-GC-CAcCGCCGGCc -3'
miRNA:   3'- gaCCCGGGGcaaCGaGUuGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 95658 0.66 0.854771
Target:  5'- aUGGGCCagUGUcUGCUCGACGagGGCGu -3'
miRNA:   3'- gACCCGGg-GCA-ACGAGUUGUggUCGU- -5'
10927 5' -58 NC_002794.1 + 13493 0.66 0.854771
Target:  5'- -cGGGCgcacggcccCCCGgucccccGCUCAgcggaaccACGCCAGCAg -3'
miRNA:   3'- gaCCCG---------GGGCaa-----CGAGU--------UGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 147804 0.66 0.847027
Target:  5'- gCUGGGCa-CGgcGCUgAugGCCGGCc -3'
miRNA:   3'- -GACCCGggGCaaCGAgUugUGGUCGu -5'
10927 5' -58 NC_002794.1 + 48712 0.66 0.847027
Target:  5'- --cGGCCCCGggGCcgCgAGgGCCAGCu -3'
miRNA:   3'- gacCCGGGGCaaCGa-G-UUgUGGUCGu -5'
10927 5' -58 NC_002794.1 + 131452 0.66 0.84229
Target:  5'- -aGGGCCaCCGUcgucauccccaacgGCuUCAGCgccaACCAGCAa -3'
miRNA:   3'- gaCCCGG-GGCAa-------------CG-AGUUG----UGGUCGU- -5'
10927 5' -58 NC_002794.1 + 134765 0.66 0.839095
Target:  5'- --cGGCCCCG-UGCUCugggagaaagGGgACCAGCu -3'
miRNA:   3'- gacCCGGGGCaACGAG----------UUgUGGUCGu -5'
10927 5' -58 NC_002794.1 + 151637 0.66 0.839095
Target:  5'- -cGGGCgCCGaggGCUCggUGCCgGGCGg -3'
miRNA:   3'- gaCCCGgGGCaa-CGAGuuGUGG-UCGU- -5'
10927 5' -58 NC_002794.1 + 82337 0.66 0.839095
Target:  5'- -gGGaGCUCCGccgGCUCGGCgucGCCGGCc -3'
miRNA:   3'- gaCC-CGGGGCaa-CGAGUUG---UGGUCGu -5'
10927 5' -58 NC_002794.1 + 75552 0.67 0.830982
Target:  5'- -gGGGCCuuGcUGUuccgucUCGACACgGGCAc -3'
miRNA:   3'- gaCCCGGggCaACG------AGUUGUGgUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.