miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 5' -58 NC_002794.1 + 50951 0.77 0.292248
Target:  5'- gCUGGGCCCCGccGC-CGGCACCAaccGCGc -3'
miRNA:   3'- -GACCCGGGGCaaCGaGUUGUGGU---CGU- -5'
10927 5' -58 NC_002794.1 + 11346 0.72 0.533638
Target:  5'- -cGGGCCCCGc-GCgCGGCGCgGGCGa -3'
miRNA:   3'- gaCCCGGGGCaaCGaGUUGUGgUCGU- -5'
10927 5' -58 NC_002794.1 + 69745 0.71 0.592829
Target:  5'- cCUGGGCgCCGc-GCUCGucuGCGCCGGUu -3'
miRNA:   3'- -GACCCGgGGCaaCGAGU---UGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 50133 0.71 0.612847
Target:  5'- -cGGGCgCUGgagGCggCGGCGCCGGCAu -3'
miRNA:   3'- gaCCCGgGGCaa-CGa-GUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 111974 0.7 0.62288
Target:  5'- --cGGCCCCGg-GCUCGGCGCCcgacgagcccGGCAc -3'
miRNA:   3'- gacCCGGGGCaaCGAGUUGUGG----------UCGU- -5'
10927 5' -58 NC_002794.1 + 184628 0.7 0.63292
Target:  5'- -cGGGuCCCCGaUGCUUAGCugCAcGUAc -3'
miRNA:   3'- gaCCC-GGGGCaACGAGUUGugGU-CGU- -5'
10927 5' -58 NC_002794.1 + 2876 0.7 0.671999
Target:  5'- -aGGGCgcggucgcccucgCCCGgcgUGUgCAGCGCCAGCGg -3'
miRNA:   3'- gaCCCG-------------GGGCa--ACGaGUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 77607 0.69 0.692875
Target:  5'- -cGGGCUggaggucggCCGggGCggCGGCGCCGGCGu -3'
miRNA:   3'- gaCCCGG---------GGCaaCGa-GUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 90563 0.69 0.692875
Target:  5'- -gGGGUCCCG--GCUCAGCAgCAGg- -3'
miRNA:   3'- gaCCCGGGGCaaCGAGUUGUgGUCgu -5'
10927 5' -58 NC_002794.1 + 129328 0.69 0.692875
Target:  5'- -cGGGUCCgCGaaGgUCGGCGCCGGCGg -3'
miRNA:   3'- gaCCCGGG-GCaaCgAGUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 110813 0.69 0.702745
Target:  5'- -cGGGCCCgc--GCUCGACgACCGGCc -3'
miRNA:   3'- gaCCCGGGgcaaCGAGUUG-UGGUCGu -5'
10927 5' -58 NC_002794.1 + 70772 0.69 0.712558
Target:  5'- gCUGGGCUCCagcgaGCUCGAguucacggcCACCAGCc -3'
miRNA:   3'- -GACCCGGGGcaa--CGAGUU---------GUGGUCGu -5'
10927 5' -58 NC_002794.1 + 54353 0.69 0.712558
Target:  5'- -gGGGuCCCUGUcGCUaCGACGCCugGGCGg -3'
miRNA:   3'- gaCCC-GGGGCAaCGA-GUUGUGG--UCGU- -5'
10927 5' -58 NC_002794.1 + 135229 0.69 0.722304
Target:  5'- -cGGGCggaCCCGgcGCcggCGGCGCCGGCc -3'
miRNA:   3'- gaCCCG---GGGCaaCGa--GUUGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 96908 0.68 0.751063
Target:  5'- gCUGGGgCUCG-UGCUgGGCGCCgucGGCGg -3'
miRNA:   3'- -GACCCgGGGCaACGAgUUGUGG---UCGU- -5'
10927 5' -58 NC_002794.1 + 110638 0.68 0.751063
Target:  5'- aCUcGGCCCCGcucgGCUCG--ACCAGCu -3'
miRNA:   3'- -GAcCCGGGGCaa--CGAGUugUGGUCGu -5'
10927 5' -58 NC_002794.1 + 116431 0.68 0.760459
Target:  5'- -aGGGCCCgGcgGCggcggCGGCgACCGGCGc -3'
miRNA:   3'- gaCCCGGGgCaaCGa----GUUG-UGGUCGU- -5'
10927 5' -58 NC_002794.1 + 175198 0.67 0.796865
Target:  5'- -gGGGUCCUGcUGCUCAAC-UCGGUc -3'
miRNA:   3'- gaCCCGGGGCaACGAGUUGuGGUCGu -5'
10927 5' -58 NC_002794.1 + 146867 0.67 0.796865
Target:  5'- --aGGCCCCGUUcgaaGCUCucccGCGCCgcGGCGg -3'
miRNA:   3'- gacCCGGGGCAA----CGAGu---UGUGG--UCGU- -5'
10927 5' -58 NC_002794.1 + 103531 0.67 0.796865
Target:  5'- -gGGGCCCgGgcgggcgGCUCGGCgucaacgucgACCGGCu -3'
miRNA:   3'- gaCCCGGGgCaa-----CGAGUUG----------UGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.