miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 5' -58 NC_002794.1 + 1764 0.66 0.876817
Target:  5'- gUGuGCCCCGaacacgUGCUgCGGCACCGcGCGc -3'
miRNA:   3'- gACcCGGGGCa-----ACGA-GUUGUGGU-CGU- -5'
10927 5' -58 NC_002794.1 + 2876 0.7 0.671999
Target:  5'- -aGGGCgcggucgcccucgCCCGgcgUGUgCAGCGCCAGCGg -3'
miRNA:   3'- gaCCCG-------------GGGCa--ACGaGUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 9944 0.66 0.854771
Target:  5'- -cGGGCCCCuc-GC-CAcCGCCGGCc -3'
miRNA:   3'- gaCCCGGGGcaaCGaGUuGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 10577 0.67 0.822695
Target:  5'- gUGGGCCgCCGgacaGgUCAGCACCAc-- -3'
miRNA:   3'- gACCCGG-GGCaa--CgAGUUGUGGUcgu -5'
10927 5' -58 NC_002794.1 + 11346 0.72 0.533638
Target:  5'- -cGGGCCCCGc-GCgCGGCGCgGGCGa -3'
miRNA:   3'- gaCCCGGGGCaaCGaGUUGUGgUCGU- -5'
10927 5' -58 NC_002794.1 + 13493 0.66 0.854771
Target:  5'- -cGGGCgcacggcccCCCGgucccccGCUCAgcggaaccACGCCAGCAg -3'
miRNA:   3'- gaCCCG---------GGGCaa-----CGAGU--------UGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 15285 0.66 0.862321
Target:  5'- -gGGGCCCaGUUGUcCcACGgCAGCAg -3'
miRNA:   3'- gaCCCGGGgCAACGaGuUGUgGUCGU- -5'
10927 5' -58 NC_002794.1 + 44255 0.67 0.796865
Target:  5'- -cGGGCCCgCGguucCUCGGCugacgGCCGGCAc -3'
miRNA:   3'- gaCCCGGG-GCaac-GAGUUG-----UGGUCGU- -5'
10927 5' -58 NC_002794.1 + 48712 0.66 0.847027
Target:  5'- --cGGCCCCGggGCcgCgAGgGCCAGCu -3'
miRNA:   3'- gacCCGGGGCaaCGa-G-UUgUGGUCGu -5'
10927 5' -58 NC_002794.1 + 50133 0.71 0.612847
Target:  5'- -cGGGCgCUGgagGCggCGGCGCCGGCAu -3'
miRNA:   3'- gaCCCGgGGCaa-CGa-GUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 50951 0.77 0.292248
Target:  5'- gCUGGGCCCCGccGC-CGGCACCAaccGCGc -3'
miRNA:   3'- -GACCCGGGGCaaCGaGUUGUGGU---CGU- -5'
10927 5' -58 NC_002794.1 + 52144 0.66 0.876817
Target:  5'- -cGGGCCCCGgcggGCgUCGuccuCGCCcGCc -3'
miRNA:   3'- gaCCCGGGGCaa--CG-AGUu---GUGGuCGu -5'
10927 5' -58 NC_002794.1 + 54353 0.69 0.712558
Target:  5'- -gGGGuCCCUGUcGCUaCGACGCCugGGCGg -3'
miRNA:   3'- gaCCC-GGGGCAaCGA-GUUGUGG--UCGU- -5'
10927 5' -58 NC_002794.1 + 69745 0.71 0.592829
Target:  5'- cCUGGGCgCCGc-GCUCGucuGCGCCGGUu -3'
miRNA:   3'- -GACCCGgGGCaaCGAGU---UGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 70772 0.69 0.712558
Target:  5'- gCUGGGCUCCagcgaGCUCGAguucacggcCACCAGCc -3'
miRNA:   3'- -GACCCGGGGcaa--CGAGUU---------GUGGUCGu -5'
10927 5' -58 NC_002794.1 + 75552 0.67 0.830982
Target:  5'- -gGGGCCuuGcUGUuccgucUCGACACgGGCAc -3'
miRNA:   3'- gaCCCGGggCaACG------AGUUGUGgUCGU- -5'
10927 5' -58 NC_002794.1 + 77607 0.69 0.692875
Target:  5'- -cGGGCUggaggucggCCGggGCggCGGCGCCGGCGu -3'
miRNA:   3'- gaCCCGG---------GGCaaCGa-GUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 82337 0.66 0.839095
Target:  5'- -gGGaGCUCCGccgGCUCGGCgucGCCGGCc -3'
miRNA:   3'- gaCC-CGGGGCaa-CGAGUUG---UGGUCGu -5'
10927 5' -58 NC_002794.1 + 82479 0.67 0.805629
Target:  5'- -cGGGCCgCCGUcgUGCagGcGCugCAGCAc -3'
miRNA:   3'- gaCCCGG-GGCA--ACGagU-UGugGUCGU- -5'
10927 5' -58 NC_002794.1 + 90563 0.69 0.692875
Target:  5'- -gGGGUCCCG--GCUCAGCAgCAGg- -3'
miRNA:   3'- gaCCCGGGGCaaCGAGUUGUgGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.